BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG07FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig359 819 0.0
3x_Contig621 396 e-110
>3x_Contig359
Length = 833
Score = 819 bits (413), Expect = 0.0
Identities = 413/413 (100%)
Strand = Plus / Minus
Query: 88 tgcaatatttattgaaagggcctgtaatcgatctctcgttattatagtcttaaatagttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgcaatatttattgaaagggcctgtaatcgatctctcgttattatagtcttaaatagttg 354
Query: 148 atcatcaggcgacaatgggatgtaaaagtttagcatttgggaacaaacagagaacgcatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atcatcaggcgacaatgggatgtaaaagtttagcatttgggaacaaacagagaacgcatt 294
Query: 208 caaattagcagctacggaatcatcacagagtagttcaagaagatcatttcttatatgagt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 caaattagcagctacggaatcatcacagagtagttcaagaagatcatttcttatatgagt 234
Query: 268 gtttgtcaatattgacatcaaaatagaattgcgctgcattgacggaagttgactcaaaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gtttgtcaatattgacatcaaaatagaattgcgctgcattgacggaagttgactcaaaaa 174
Query: 328 gaaatgaatacctttccaataggaagaagactcttctttgagccaatcaaaacaatttag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaaatgaatacctttccaataggaagaagactcttctttgagccaatcaaaacaatttag 114
Query: 388 tagagattcctgtagattgtcatcaataagcctgacatcgatactaagtggttcatttag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tagagattcctgtagattgtcatcaataagcctgacatcgatactaagtggttcatttag 54
Query: 448 ctttgaacatatgataacgaaccatgaggtgtggactgatagagtagcttcct 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ctttgaacatatgataacgaaccatgaggtgtggactgatagagtagcttcct 1
>3x_Contig621
Length = 2486
Score = 396 bits (200), Expect = e-110
Identities = 256/267 (95%), Gaps = 6/267 (2%)
Strand = Plus / Minus
Query: 542 gccatatcatctttgttgcgatccaatgcacattgaagctgcggtttcaattctgacgag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109 gccatatcatctttgttgcgatccaatgcacattgaagctgcggtttcaattctgacgag 2050
Query: 602 aatagagcacttatgaataataaataattctccttcttcatggtatgcanggcttgaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2049 aatagagcacttatgaataataaataattctccttcttcatggtatgca-ggcttgaaat 1991
Query: 662 gaaatataaatcattccaattattttcatatttcaccgctactgttgcangaaggttgtt 721
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
Sbjct: 1990 gaaatataaatcattccaatcattttcata-ttcaccgctactgttgcaggaaggttg-t 1933
Query: 722 gttagtgcactgagttgttcatcaataattaggtaaagggcagttaagaacgaatttcaa 781
|||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
Sbjct: 1932 gttagtgcactgagttgttcatcagtaataaggt-aagggcagttaagaacgaatttc-a 1875
Query: 782 gttggttatgtaatatgagtttcactt 808
||| ||||||| |||||||||||||||
Sbjct: 1874 gtttgttatgt-atatgagtttcactt 1849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7701
Number of Sequences: 1807
Number of extensions: 7701
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)