BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG07RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 1285 0.0
>3x_Contig1714
Length = 18873
Score = 1285 bits (648), Expect = 0.0
Identities = 744/769 (96%), Gaps = 9/769 (1%)
Strand = Plus / Minus
Query: 46 cttctgctatcaataccgtagacagctggaacgttgctctctttcaaccaagtacctaaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 cttctgctatcaataccgtagacagctggaacgttgctctctttcaaccaagtacctaaa 5150
Query: 106 gaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5149 gaagattgagctaaccagtgagaatattcttcggtgtaatgagcaatgactaaaccagca 5090
Query: 166 acatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5089 acatgaattctgttggattcaaaataacgtggtaatccttccacgtattcatccattaat 5030
Query: 226 ttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgaccc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5029 ttacggtcagggacaccgtagttaccaaccaatgggaaagtgataactaaaatctgaccc 4970
Query: 286 tcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 tcataagaaggatctgtgatggactctgggtaaccgaccataccagtttggaaaaccaat 4910
Query: 346 tcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatccttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 tcaccggctgcagtggtttcggcaccaaaggagtaaccttgtaaagtagttccatccttt 4850
Query: 406 aattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 aattccaaggtaatcatacgatcaccagtagactccattggaggggtgataggagcagta 4790
Query: 466 ggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 ggagtgataatagacataacggaagtttgtattttcttaagcgtaaagggtgtttcaaac 4730
Query: 526 gatgaactaacctattggatttattntcacttcttttgcttctttaaaagcagcaacggg 585
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4729 gatgaactaacctattggatttattttcacttcttttgcttctttaaaagcagcaacggg 4670
Query: 586 gggggaaactannnagtaaa--taaacaatgaggttttttacccgattggatcccttcta 643
||||| ||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 4669 ggggg--acttaaaagtaaaataaaacaatgaggttttttacccgattggatcctttcta 4612
Query: 644 actatgtgtaataatgaaaagaatcgcactanatgaatgggcattgatgtttaaagttta 703
||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct: 4611 actatgtgtaataatgaaaagaatcgcactaaatgaatggcaattgatgttt-aagttta 4553
Query: 704 taattgactctaattttacctcttttagttataggtaagaaaattaatcaattaaatggg 763
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||
Sbjct: 4552 taattgactctaattttacctctcttagttataggtaag-aaattaatcaattaagt-gg 4495
Query: 764 tttttattccttttaaaataaatgtccaatccttaaatcggaatttttt 812
|||||||||| |||||||| |||||| ||| |||| |||| ||||||||
Sbjct: 4494 tttttattcc-tttaaaattaatgtctaat-cttagatcgtaatttttt 4448
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7062
Number of Sequences: 1807
Number of extensions: 7062
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)