BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1675 1279 0.0
>3x_Contig1675
Length = 13954
Score = 1279 bits (645), Expect = 0.0
Identities = 698/709 (98%), Gaps = 5/709 (0%)
Strand = Plus / Minus
Query: 86 tatgttctatcgatatgccagctggtccaagtgaagtcttggtcatttgtgatgaagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11105 tatgttctatcgatatgccagctggtccaagtgaagtcttggtcatttgtgatgaagaag 11046
Query: 146 ctgatgttgactttgttgcatcggatttgctatcacaggctgagcatggtattgactctc 205
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11045 ctgatgttgaatttgttgcatcggatttgctatcacaggctgagcatggtattgactctc 10986
Query: 206 aagttattttggtaggtgtctcgttatctgactcgaagattgaagctttacaaaatgctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10985 aagttattttggtaggtgtctcgttatctgactcgaagattgaagctttacaaaatgctg 10926
Query: 266 ttcacgaacaagctatgcagctacctagagttgatattgttcgtaaatgtatcgcccaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10925 ttcacgaacaagctatgcagctacctagagttgatattgttcgtaaatgtatcgcccaca 10866
Query: 326 gctcaatcattctatgtgattcttacgaagaagccttcaagatgtcgaaccaatatgctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10865 gctcaatcattctatgtgattcttacgaagaagccttcaagatgtcgaaccaatatgctc 10806
Query: 386 ctgaacatttgattctacaaatttcaaatgccgaagactatgtcaaagatgtggatcacg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10805 ctgaacatttgattctacaaatttcaaatgccgaagactatgtcaaagatgtggatcacg 10746
Query: 446 ccggttccatttttgttggtgcttatactccagaatcatgtggtgattactctagtggta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10745 ccggttccatttttgttggtgcttatactccagaatcatgtggtgattactctagtggta 10686
Query: 506 cgaatcatacattacctacctatggttatgctaggcagtacagtggtgtgaacacagcca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10685 cgaatcatacattacctacctatggttatgctaggcagtacagtggtgtgaacacagcca 10626
Query: 566 ctttccagaagtttatcacttctcaagtggtcaccccagtcggtttagaacatattggtc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10625 ctttccagaagtttatcacttctcaagtggtcaccccagtcggtttagaacatattggtc 10566
Query: 626 atgctgtgatgagtgttgctaaagtcgaatgcttggatgctcacagaaacgcagtcaaga 685
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 10565 atgctgtgatgagtgttgctaaagtcgaaggcttggatgctcacagaaacgcagtcaaga 10506
Query: 686 tcatgatgtcaaagttgggcttactaccatcaggtttntgaataatatataaactaactt 745
||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 10505 tcaggatgtcaaagttgggcttactaccatcaggttt-tgaataatata-gaactaac-t 10449
Query: 746 tattaagatttggaatttaatatctaaaaagaaaataattgctatgttt 794
||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 10448 tattaagattt-gaatttaatatctaaaagaaaaataa-tgctatgttt 10402
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6808
Number of Sequences: 1807
Number of extensions: 6808
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)