BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG09FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig247 1285 0.0
>3x_Contig247
Length = 997
Score = 1285 bits (648), Expect = 0.0
Identities = 798/838 (95%), Gaps = 9/838 (1%)
Strand = Plus / Minus
Query: 85 accttatcaaaattgatggatattgagttccgatccctcgccgtaatatttcataacttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 accttatcaaaattgatggatattgagttccgatccctcgccgtaatatttcataacttt 848
Query: 145 aaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtctcca 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gaaattcccttccttcgagcgatatgtttcgaatttccgttggaatcttccacgtctcca 788
Query: 205 gtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactgata 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtgttttagggttgttctcgcgcatacaattttaaaaaaaaaaaagtgaggccactgata 728
Query: 265 tcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcattatcg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcactacatgagatacagagacgggatcatgacagtttcttcaagtatgattcattatcg 668
Query: 325 gggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatataaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggattttgttgcggtcgtcaaaactgtaatataaacgggctgaaagattcatatataaa 608
Query: 385 ctctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagataaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctctttaagatcaattcacttatatctggcaaatttcagttcgaaaactaaaagataaga 548
Query: 445 agcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcgact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agcgattacgttcggaaacagtattgatttactttaaggatagatacatgggaatcgact 488
Query: 505 tgagtttgattttgggtaagcaggtaactttcccactattttgctatcgttcgtatcaat 564
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 tgagtttgattttgggtaagcaggtaactttcccactattttgctacgtttcgtatcaat 428
Query: 565 tgtataaagatctgtnttgtggcgatgcgaaacatattaattccagtgtgaacattagtg 624
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 427 tgtataaagatctggtttgtggcgatgcgaaacaaattaattccagtgtgaacattagtg 368
Query: 625 acgatgttttcgctgatgatattgataagaaaagtactgcgct-aaagattacggtgatt 683
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 367 acgatgttttcgctgatgatattgataagaaaagtactgcgctaaaagataacggtgata 308
Query: 684 agc-aggagagagatgggaacctgtgagtttcatgaaagacatccagccatctacagcag 742
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcaagaagagagatgggaacctgtgagtttcatgaaagacatccagccatctacagcag 248
Query: 743 aaagggattacaaattattggttcgatacacaacctttttctttacaaacctttcaagcc 802
||||||||||||||||| ||||||||||||| ||| ||| | |||| |||||||||||||
Sbjct: 247 aaagggattacaaatta-tggttcgatacaccacc-tttcccttaccaacctttcaagcc 190
Query: 803 tggtggatttcagatatacaatgggggtaagggccgatgccaaatgattattgcctattg 862
|||| || | ||||| |||||||| |||| |||||||||||||||| ||||| ||| |
Sbjct: 189 tggt-gaatacagattaacaatgggtgtaa-ggccgatgccaaatgaatattggctagt- 133
Query: 863 gtttgaaagccctccttaggtaagaattgaaaagaaatgggggatgggatcaaaaata 920
|||||||||| ||| | | | ||||| |||||||| | |||||| |||||||||||
Sbjct: 132 gtttgaaagcactcttaaagatagaatagaaaagaa--gtgggatgtgatcaaaaata 77
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,243
Number of Sequences: 1807
Number of extensions: 13243
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)