BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG09RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1223 0.0
>3x_Contig1384
Length = 9372
Score = 1223 bits (617), Expect = 0.0
Identities = 764/803 (95%), Gaps = 9/803 (1%)
Strand = Plus / Minus
Query: 44 cttggcattttcgatagttattttcaagtcaaagcttgaatggttccagttgaatggttg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8070 cttggcattttcgatagttattttcaagtcaaagcttgaatggttccagttgaatggttg 8011
Query: 104 ttcgatattcatttagttgaagcgtaaataccgtcgccttgcgctcatggttccttaaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 ttcgatattcatttagttgaagcgtaaataccgtcgccttgcgctcatggttccttaaat 7951
Query: 164 tccgatttaaatagcttcacaacacaagctgcgattaattactttcaattagactacaaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 tccgatttaaatagcttcacaacacaagctgcgattaattactttcaattagactacaaa 7891
Query: 224 atatgaaaagaatgctagtatgttcgattacatgattgttagttcctgaagatgcataga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 atatgaaaagaatgctagtatgttcgattacatgattgttagttcctgaagatgcataga 7831
Query: 284 tgatacgtgtctgtttgtgttggtattaaatcatcatgacaagaactagcaccaaaatct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7830 tgatacgtgtctgtttgtgttggtattaaatcatcatgacaagaactagcaccaaaatct 7771
Query: 344 gaaaattctataataaagtggtttagatgcaagtttgactctttgaatttctaattcatg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7770 gaaaattctataataaagtggtttagatgcaagtttgactctttgaatttctaattcatg 7711
Query: 404 tttcattatttcaacatcactatgtgacaatcctgtatcgaggtcgataccagagagtgg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7710 tttcattatttcaacatcactatgtgacaatcctgtatcgaggtcgataccagagagtgg 7651
Query: 464 gattacaaatgatttccaattccctgtataggacttgtgaccaatgtaaacggcgatcat 523
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7650 gataacaaatgatttccaattccctgtataggacttgtgaccaatgtaaacggcgatcat 7591
Query: 524 tatggggattgatagancatatttgaagatagcttctgcactgggtgattcgccgagagg 583
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7590 tatggggattgatagacaatatttgaagaaagcttctgcactgggtgattcgccgagagg 7531
Query: 584 gaaaagtgagacgtaaatttcacctacgatcaacaaggcactcattagttagccccaaat 643
||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||
Sbjct: 7530 gaaaagtgagacgtaaatttcacctacgatcaacagggcactcaaaagtaag-cccaaat 7472
Query: 644 atgccccccaatttcc-agcatcgatttgtacgcaatttcgtcggcacttctggtcgggt 702
| ||||||||| |||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct: 7471 aagccccccaaattccaagcatcgatttgtacgcaatttcgtcggcacttctgttctgtt 7412
Query: 703 tctttaatgcccattatttacgcaatta--gattgcaaatggagaacc-aatgaacatcg 759
|||||||||||||| | |||||| || || |||||||||||||| |||||||||||
Sbjct: 7411 tctttaatgcccatctataacgcaaataagaatagcaaatggagaaccaaatgaacatcg 7352
Query: 760 -aggaattggacctagggcaaac-acccatc-aattcctcgcttacttttgtcgaagcc- 815
|| ||| | || || ||||||| ||| ||| ||| ||||||| ||||| ||||||||
Sbjct: 7351 aagaaatagaacataaggcaaacaaccaatcaaatacctcgctaactttgttcgaagcca 7292
Query: 816 caatgaagggcaaaaacccgaaa 838
|||||||||||||||||||||||
Sbjct: 7291 caatgaagggcaaaaacccgaaa 7269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6210
Number of Sequences: 1807
Number of extensions: 6210
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)