BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG10FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1296 0.0
>3x_Contig1769
Length = 25795
Score = 1296 bits (654), Expect = 0.0
Identities = 678/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 86 cttgtgacatatacttccaagtcattggtttcaaagttacaatggttcaaaatatgcata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6477 cttgtgacatatacttccaagtcattggtttcaaagttacaatggttcaaaatatgcata 6536
Query: 146 tcttccctttctctaatcaaccagatgaatttgagatagtctaaattcctggtttgcagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 tcttccctttctctaatcaaccagatgaatttgagatagtctaaattcctggtttgcagg 6596
Query: 206 tatttaaatatgctcaacccgaatgaaattccacttcctccaacaacgatagctacacgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 tatttaaatatgctcaacccgaatgaaattccacttcctccaacaacgatagctacacgc 6656
Query: 266 tgagaatcatacaataatgatggtggaacagtactgtacacatccacaaccgtatattca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 tgagaatcatacaataatgatggtggaacagtactgtacacatccacaaccgtatattca 6716
Query: 326 cctacgacaacgtatggagtgaggttctctctgataataaggtctatttggctctcatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 cctacgacaacgtatggagtgaggttctctctgataataaggtctatttggctctcatct 6776
Query: 386 ggaagtgaagctatagtgtagggttgagtgggcatcaaccagtacaatggattctttttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 ggaagtgaagctatagtgtagggttgagtgggcatcaaccagtacaatggattctttttc 6836
Query: 446 ttatatttcgaaagacgcagatgggagcctggaagccaatccctaatagcacttctatca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 ttatatttcgaaagacgcagatgggagcctggaagccaatccctaatagcacttctatca 6896
Query: 506 agtttcacgtaggtaagagatgtgtcatcctttaccctctgggtcacattaacagtagtt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6897 agtttcacgtaggtaagagatgtgtcatcctttaccctctgggtcacattaacagtagtt 6956
Query: 566 gagtagtagatgtaacttatccccctncaaatgtacaatgccaataagataaagaaatag 625
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6957 gagtagtagatgtaacttatccccctccaaatgtacaatgccaataagataaagaaatag 7016
Query: 626 ggaactgtcactcttggtctagcatgaattgggaccaaaaataccatagcccactggcct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7017 ggaactgtcactcttggtctagcatgaattgggaccaaaaataccatagcccactggcct 7076
Query: 686 aattgatgaatgacataaaatgatctattactttaacgtctccttattctaacggaagc- 744
|||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct: 7077 aattgatgaatgacataaaatgatctataactataacgtctccatattctaacggaagca 7136
Query: 745 aacatttggatgattagtggaacaa 769
|||||| |||||| |||||||||||
Sbjct: 7137 aacattaggatgaatagtggaacaa 7161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5661
Number of Sequences: 1807
Number of extensions: 5661
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)