BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG10RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1326 0.0
>3x_Contig1166
Length = 5040
Score = 1326 bits (669), Expect = 0.0
Identities = 821/862 (95%), Gaps = 9/862 (1%)
Strand = Plus / Minus
Query: 39 aactgttcttctaat-aaatgttctctcgattgaacaagacattgaatggaaacatcttc 97
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4370 aactgttcttctaatcaaatgttctctcgattgaacaagacattgaatggaaacatcttc 4311
Query: 98 tggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatgggaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4310 tggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatgggaa 4251
Query: 158 tgagacctcaatttctttgaaaccaatctcaatcaacttatggaaatattccttcttctg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4250 tgagacctcaatttctttgaaaccaatctcaatcaacttatggaaatattccttcttctg 4191
Query: 218 ctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaagcca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 ctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaagcca 4131
Query: 278 cctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatctgtgg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4130 cctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatctgtgg 4071
Query: 338 gtatggtctatatttcgtcgatggatcttttagcatattcttgtacgctagtttcactgg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4070 gtatggtctatatttcgtcgatggatcttttagcatattcttgtacgctagtttcactgg 4011
Query: 398 aggaatagcttttttcccagcctgtgctaaacgcacaacggtgttcctgaatatcatact 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4010 aggaatagcttttttcccagcctgtgctaaacgcacaacggtgttcctgaatatcatact 3951
Query: 458 caatatggggtatggttgcctggtcgtatcacctttggaacagtagcttaatgtctcccc 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3950 caatatggggtatggttgcctggtcgtatcacctttggaacagtagcttaatgtctcccc 3891
Query: 518 taaatagctatcctatgaatcaactgcacanactncgtgtcctataatctcacccagac- 576
|||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||
Sbjct: 3890 taaatagctatcctatgaatcaactgcacaaactccgtgtcctaaaatctca-ccagaca 3832
Query: 577 aagactgttctggtgcatatatatatatatatgacatggctcatcacatcacgtcttttt 636
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3831 aagactgttctggtgcatatatatatatataacacatggctcatcacatcacgtcttttt 3772
Query: 637 gccg-aatttttcactcgattcagaatttttcagtttttcaatatttcagcattggcaga 695
|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 3771 gccgaaatttttcactcgattcagaatttttcagtttttcaatatttcagcatcgccaga 3712
Query: 696 aaaaagtatcgccagaacttgactgtgagttattcccataatagntttncatggcctttt 755
|||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||
Sbjct: 3711 aaaaagtatcgccagaacttgactgtgagtaattcccataatagtttttcatgg-ctttt 3653
Query: 756 cctttttctttctttaacggggngccaggaaaaaagcttcttcnaggcccnggatgaatg 815
||||||||||||||| | || |||||||||||||||| ||| || ||||||||
Sbjct: 3652 tctttttctttctttactgttttgcagggaaaaaagcttcttcgagggccgtgatgaatg 3593
Query: 816 gaattacctaaagttcttggattactttttccaaatacaaaggggaaatttaaggcaaac 875
| | ||| || ||||| | || ||||||||| ||||||| ||||| || || ||||||||
Sbjct: 3592 g-agtacgtagagttcgt-gagtactttttcgaaatacagagggg-aagttcaggcaaac 3536
Query: 876 attgctgactgggaacgttccc 897
|||||||||| |||||||||||
Sbjct: 3535 attgctgact-ggaacgttccc 3515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,410
Number of Sequences: 1807
Number of extensions: 11410
Number of successful extensions: 1208
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)