BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG11FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1049 0.0
>3x_Contig1737
Length = 17214
Score = 1049 bits (529), Expect = 0.0
Identities = 735/783 (93%), Gaps = 18/783 (2%)
Strand = Plus / Minus
Query: 88 tgattcctgatctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16801 tgattcctgatctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtga 16742
Query: 148 accagacttcaaaattgttggttcctgccccaagctcaatttatacccgtaacccattct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16741 accagacttcaaaattgttggttcctgccccaagctcaatttatacccgtaacccattct 16682
Query: 208 tcaatttcttattccgcatggctatgagtaacaccgcattaatgaacttgttgttggtgt 267
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16681 tcaatttcttaccccgcatggctatgagtaacaccgcattaatgaacttgttgttggtgt 16622
Query: 268 ttggagccaaccataagcataag-attctacaataccaggagttatcaaatggagattcc 326
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 16621 ttggagccaaccataagcataagcattctacaataccaggagttatcaaatggagattcc 16562
Query: 327 tctttggtggctaatgacttgttgattaatactttcaccaaccttatgggtcagttaacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16561 tctttggtggctaatgacttgttgattaatactttcaccaaccttatgggtcagttaacc 16502
Query: 387 aattttgattcaagaaatagtgattcaaccttggctaccattctattgttagctgctttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16501 aattttgattcaagaaatagtgattcaaccttggctaccattctattgttagctgctttc 16442
Query: 447 gacatcttctttggtgataagaaacaaaaatggagaacgcatgtttatggcgcaaggaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16441 gacatcttctttggtgataagaaacaaaaatggagaacgcatgtttatggcgcaaggaaa 16382
Query: 507 atcatgaaggataggatttctaacgatacaggatcagtaatgttgtct-ataacagtgca 565
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16381 atcatgaaggaaaggatttctaacgatacaggatcagtaatgttgtctaataacagtgca 16322
Query: 566 gatgtggaacaagagtattttcttttaagatggtttgcttatactgacatcattttcgtc 625
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 16321 gatgtggaacaagagtatttccttttaagatggtttgcttatactgacatca-tttcgt- 16264
Query: 626 ctttatctttcacgaatttcaattaacaatattcataaaacttaccacttttgcgtgtcg 685
||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||| ||
Sbjct: 16263 ctttatcttcaacgaa-ttcaattaacaatattcat-aaacttaccac-tttgcggtacg 16207
Query: 686 aaatgggaaaccacttttaaagaccagcttgatgcaaaagaataatggtatttaaaagat 745
|||| |||||||||| |||| || |||||||||||| ||| || ||| || |||||||||
Sbjct: 16206 aaat-ggaaaccactattaagga-cagcttgatgcagaag-atgatgtta-ttaaaagat 16151
Query: 746 ttcgagttcttcaccagaatggaaattatatttcctatggttggtagctggaaaattttc 805
|||||| |||||| |||||||| | ||| | |||||||||| |||||| | ||||
Sbjct: 16150 atcgagtacttcacaggaatggaagtaata-tgcctatggttgttagctg---agatttc 16095
Query: 806 gcgttgggttaacgaggaaagaaactgcttctaaaaattattttcccacaggaatcttat 865
||| ||||||||| ||||||||||||| |||| || ||| |||||||||| |||||||
Sbjct: 16094 tcgtctggttaacga-gaaagaaactgctactaacaa-tatattcccacagg-atcttat 16038
Query: 866 ttt 868
|||
Sbjct: 16037 ttt 16035
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7994
Number of Sequences: 1807
Number of extensions: 7994
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)