BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZG11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig835 547 e-155
3x_Contig490 531 e-151
>3x_Contig835
Length = 2829
Score = 547 bits (276), Expect = e-155
Identities = 328/340 (96%), Gaps = 4/340 (1%)
Strand = Plus / Plus
Query: 354 atactttaatgtgaaatcttttgagatttttttagttagcgactgaggatacattttaaa 413
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atactttaatgtgaa-tcttttgagatttttttagttagcgactgaggatacattttaaa 59
Query: 414 aacaaaggtcctcataaaacaaataagataggagcatcgtccgaattagataattataag 473
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 60 aacaaaggtcctcataaaacaaataagaaaggagcatcgtccgaattagataattataag 119
Query: 474 gtctagttaccagtagtgtagagtttaaattcattaaattttttaatatatacggtacta 533
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 120 gtctagttaccagtagtgtagagtttaaattcattaaatttttaaatatatacgtaacta 179
Query: 534 atgaatacatatatgtgttcgtgattcgtttaaat-aattacatttgaaaattag-aatt 591
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct: 180 atgaatacatatatgtgttcgtgattcgtttaaataaattacattagaaaattagaaatt 239
Query: 592 agatgaatagtagtgtcagcaactgtatctaatctagagtaatctcttagaagctggatt 651
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 240 agatgaatagtagtgtcagcaactgtatctaatctagagtaatctc-tagaagctggatt 298
Query: 652 attaaaagacactggaaaaaagcagaaaacttacttagtg 691
|||||||||||||||||||| ||||||||||||| ||||
Sbjct: 299 attaaaagacactggaaaaagccagaaaacttactaagtg 338
>3x_Contig490
Length = 1611
Score = 531 bits (268), Expect = e-151
Identities = 271/272 (99%)
Strand = Plus / Minus
Query: 37 gcttctatattctatatattttgtccttttataacgtctacgtgttctaatatcagatta 96
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcttctatattctatatattttgcccttttataacgtctacgtgttctaatatcagatta 213
Query: 97 ctgtgttttgttgggtcaaattcagtatcctgatccgaattatcttgttcaaattccttt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ctgtgttttgttgggtcaaattcagtatcctgatccgaattatcttgttcaaattccttt 153
Query: 157 gttttatctgttctaaaatcaggatcctggtttagggcagattcagtgacaaaatcagca 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gttttatctgttctaaaatcaggatcctggtttagggcagattcagtgacaaaatcagca 93
Query: 217 acgtctacttcctctataatcaaattagagtaagtagttggcatgtataggtattgacag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 acgtctacttcctctataatcaaattagagtaagtagttggcatgtataggtattgacag 33
Query: 277 cttctttaggctttcttgagtctttcccgtag 308
||||||||||||||||||||||||||||||||
Sbjct: 32 cttctttaggctttcttgagtctttcccgtag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8083
Number of Sequences: 1807
Number of extensions: 8083
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)