BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH01RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1416 1289 0.0
>3x_Contig1416
Length = 10161
Score = 1289 bits (650), Expect = 0.0
Identities = 743/765 (97%), Gaps = 7/765 (0%)
Strand = Plus / Minus
Query: 49 ctgctttctggagtcctt-acacacttagcatgaacaggaatcaacccatgaagagataa 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8791 ctgctttctggagtccttcacacacttagcatgaacaggaatcaacccatgaagagataa 8732
Query: 108 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8731 tggagattcttcgacaatgtatcccggcttacatttgatctccaaataagggtaacatat 8672
Query: 168 ggcatcgcttggacatgggatacaatgtggtttgaaacgttctaattggttttcgaattc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8671 ggcatcgcttggacatgggatacaatgtggtttgaaacgttctaattggttttcgaattc 8612
Query: 228 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8611 gttgatatatggattagaatattctctaccaagagttggaatgtcaacctcagaagcaca 8552
Query: 288 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8551 gaagccaacagcgattctttgttcacgataccacaacgcaaacaaaatcggcaacagtat 8492
Query: 348 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8491 taataaaaacgaaatgactttcagtaagaagcgcccagttgatatcaatccttttctaat 8432
Query: 408 tatcgaagagatgttagtttcttgagtaggtatttcgtctgttttattcttagcggcctc 467
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8431 tatcgaagagatgttagtttcttgagtaggtatttcgtctgtattattcttagcggcctc 8372
Query: 468 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8371 aattattgaggtaggatccttaacaattgtacgctcaccctcatcacccccatcaacttc 8312
Query: 528 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8311 gttttcatcctctaacaaattttctgactgctcttcggttgcagattttgggacctcttc 8252
Query: 588 ctcgctttcttcatccttggcaaaagtttctgcttttg-aataatggtatcgctctcttt 646
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 8251 ctcgctttcttcatccttggcaaaagtttctgcttttgtaatagtggtatcgctctcttc 8192
Query: 647 cccggtttangt-ataatagattggtttacttgttcccgcaatttttttacttctcttaa 705
|||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 8191 cccggtttcagtaataatagattggttcacttgttcctgcaatttttttacttctcttaa 8132
Query: 706 agttggcaggtcagtccctggaaacttccggcaagttc-ttcttgaacgactcttggtct 764
||||||||| |||||| |||| |||||||||| ||||| ||||||| |||||||| |||
Sbjct: 8131 agttggcagttcagtcgctgg-aacttccggc-agttctttcttgactgactcttgttct 8074
Query: 765 aatttttgcaaggttttggcttggttgggaatccccaaccttttt 809
| |||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 8073 actttttgcaaggttttggc-tggtttggaatcctcaaccttttt 8030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6317
Number of Sequences: 1807
Number of extensions: 6317
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)