BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH02FM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig671 1505 0.0
>3x_Contig671
Length = 1730
Score = 1505 bits (759), Expect = 0.0
Identities = 788/794 (99%), Gaps = 3/794 (0%)
Strand = Plus / Plus
Query: 88 caggtcatgtattaccgattttttttggaaaacttgggaaaagaccccgaaatcgcatac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caggtcatgtattaccgattttttttggaaaacttgggaaaagaccccgaaatcgcatac 455
Query: 148 cagaaactaatactgaatgctacaaggagggacataaacattgacacaccaatcaacata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagaaactaatactgaatgctacaaggagggacataaacattgacacaccaatcaacata 515
Query: 208 tcaaatctcatctatttcatggagattgaccctgccataagacctgaccttgaaaggata 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcaaatctcatctatttcatggagattgaccctgccataagacctgaccttgaaaggata 575
Query: 268 atgcttggagaaccaattgggtttgaaccttttgatagatattaccaatcggaattggaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atgcttggagaaccaattgggtttgaaccttttgatagatattaccaatcggaattggaa 635
Query: 328 aacggcgacgaggataacattgctatgccttcggaaattggcgaagccaatgagtataat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aacggcgacgaggataacattgctatgccttcggaaattggcgaagccaatgagtataat 695
Query: 388 ctttctcaatacgcagatttgacaatggaagagagtacacttgaaaaatatggtacgttt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctttctcaatacgcagatttgacaatggaagagagtacacttgaaaaatatggtacgttt 755
Query: 448 taccaaaaatgggcgaatccgccaactttaagatacttcgctgctagattggctcaattg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 taccaaaaatgggcgaatccgccaactttaagatacttcgctgctagattggctcaattg 815
Query: 508 tacggtacattattaccgttattatccaatgatctaatgatagaatactacactggtgat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tacggtacattattaccgttattatccaatgatctaatgatagaatactacactggtgat 875
Query: 568 tacaaattttatactgataaatttcaatatgattcggcattgttaaagcaagagtgccac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tacaaattttatactgataaatttcaatatgattcggcattgttaaagcaagagtgccac 935
Query: 628 agcagctcccaattttggtttgggaaacgatccgttgaacctattgtgccaacaaagaag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 agcagctcccaattttggtttgggaaacgatccgttgaacctattgtgccaacaaagaag 995
Query: 688 aatctagtgacgttttgtaagtactgtgattttcatgatgtctgcggatggagagctaat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 aatctagtgacgttttgtaagtactgtgattttcatgatgtctgcggatggagagctaat 1055
Query: 748 ggcaacaagatgttcaaacaactaggtcctaccttagaagaagat-agtaaactctaagt 806
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 1056 ggcaacaagatgttcaaacaactaggtcctaccttagaag-agataagtaaactctaggt 1114
Query: 807 gctaccggccaccacttgatatncatgctatctatatatgtttttaaatattaattattt 866
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 1115 gctaccggccaccacttgatatccatgctatctatatatgttttt-aatatttattattt 1173
Query: 867 atttgttagcttaa 880
||||||||||||||
Sbjct: 1174 atttgttagcttaa 1187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6488
Number of Sequences: 1807
Number of extensions: 6488
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)