BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH02RM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1341 551 e-157
>3x_Contig1341
Length = 7901
Score = 551 bits (278), Expect = e-157
Identities = 327/338 (96%), Gaps = 4/338 (1%)
Strand = Plus / Plus
Query: 63 gggaaagatactggtatttatccaggtactagtaaagatttgcaattcttggagaaacta 122
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4581 gggaaagaaactggtatttatccaggtactagtaaagatttgcaattcttggagaaacta 4640
Query: 123 gagcaatgtttggacatccttcatgcattgtttgagaagaggccaatatgggttaagcgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4641 gagcaatgtttggacatccttcatgcattgtttgagaagaggccaatatgggttaagcgt 4700
Query: 183 catattgacggtatagtaccattagatttgcatcctgtcttgaaagtagccttatcttta 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4701 catattgacggtatagtaccattagatttgcatcctgccttgaaagtagccttatcttta 4760
Query: 243 tgttcatacagatttaccaaaagtccctggagaaatagttatatcaagctaggcgttgat 302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 tgttcatacagatttaccaaaggtccctggagaaatagttatatcaagctaggcgttgat 4820
Query: 303 ccacgtacttcaaaagagtatgctcaata-caaacagagtactttaagattgagaagaaa 361
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct: 4821 ccacgtacttcaaaagagtatgctcaataccaaacagagtactttaagattgag-aggaa 4879
Query: 362 gctaccaccgggaccccgtaattcaagaagaatttacc 399
||||| | | |||||| |||| ||||||||||||||||
Sbjct: 4880 gctacta-caggacccagtaa-tcaagaagaatttacc 4915
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,898
Number of Sequences: 1807
Number of extensions: 32898
Number of successful extensions: 1301
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)