BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1411 0.0
>3x_Contig1784
Length = 28126
Score = 1411 bits (712), Expect = 0.0
Identities = 786/804 (97%), Gaps = 7/804 (0%)
Strand = Plus / Plus
Query: 81 ttggatatttggtgtcattctaaatggaacaggttcattattatggaaaacaggagcgga 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26664 ttggatatttggtgtcattctaaatggaacaggttcattattatggaaaacaggagcgga 26723
Query: 141 gtttggcaagttagtctcaaattgttttgcatattgattcactctttcataagaataacg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26724 gtttggcaagttagtctcaaattgttttgcatattgattcactctttcataagaataacg 26783
Query: 201 agatggtaacatttctaaagtatgaacattacctgatttctcatcgacaaatatcttatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26784 agatggtaacatttctaaagtatgaacattacctgatttctcatcgacaaatatcttatg 26843
Query: 261 tggagatctattattaatggatagcataaaggtcatgaacacgaacgccgcatactggga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26844 tggagatctattattaatggatagcataaaggtcatgaacacgaacgccgcatactggga 26903
Query: 321 agcaaactgtttacggaataaccaaaaatcttcgaactctgagaataatttggaatagta 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26904 agcaaactgtttacggaataaccaaaaatcttcgaactctgagaataatttggaatagta 26963
Query: 381 gtctttcaataaagtcgatggaatgaacaacgaatgaattgaactgaaaa-tttcaactt 439
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 26964 gtctttcaataaagtcgatggaatgaacaacgaatgaattgaactgaaaaatttcaactt 27023
Query: 440 tcactgcggttatgtcgggagggggcaatactttgtcatgtgcaacgttaagttgttcag 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27024 tcactgcggttatgtcgggagggggcaatactttgtcatgtgcaacgttaagttgttcag 27083
Query: 500 tgataaagtcttgaatagcgtccctatccatgttcttcttggcacagaattcgtcataaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27084 tgataaagtcttgaatagcgtccctatccatgttcttcttggcacagaattcgtcataaa 27143
Query: 560 tttgatgcaatgttctgaaagacgcactgtcactcataacacgtacttgatgagatagtg 619
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 27144 tttgatgcaatgttctgaaagacgcactgtcactcataacacgtacttgaggagatagtg 27203
Query: 620 gaacagcgattggtacagtgaattgaatatcacgacgtctagtctgaacatttttacgca 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27204 gaacagcgattggtacagtgaattgaatatcacgacgtctagtctgaacatttttacgca 27263
Query: 680 atctctcattcaatagtctgtataattggaacatttcttcctctcgcctanaatgacgca 739
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 27264 atctctcattcaatagtctgtataattggaacattctttcctctcgcctagaatgacgca 27323
Query: 740 cggctggatattgtactgcgaatgaatgtaaagaaccatcgtgcccccttatcgttaaat 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27324 cggctggatattgtactgcgaatgaatgtaaagaaccatcgtgcccccttatcgttaa-- 27381
Query: 800 tcttc-gtgggatgttatgattgccgcgtgttgagttcgacttctggcatata-ctgncg 857
||||| |||||||| ||||| ||||||||| ||| ||||||||||||||| | ||| ||
Sbjct: 27382 tcttcggtgggatg-tatgagtgccgcgtg-tgaagtcgacttctggcataaacctgccg 27439
Query: 858 attttgacaaaaagtgngttattg 881
|||||||||||| ||| |||||||
Sbjct: 27440 attttgacaaaatgtgtgttattg 27463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6194
Number of Sequences: 1807
Number of extensions: 6194
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)