BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH03RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1404 0.0
>3x_Contig1772
Length = 25851
Score = 1404 bits (708), Expect = 0.0
Identities = 781/798 (97%), Gaps = 6/798 (0%)
Strand = Plus / Minus
Query: 46 cttctaatccagtggccaaatattggcacacattagtgtaccaaatagatcactacctct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6517 cttctaatccagtggccaaatattggcacacattagtgtaccaaatagatcactacctct 6458
Query: 106 acggcgaccaagtttctaaggttcccgaaggtactgtctttgatacatacgtccatgccc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6457 acggcgaccaagtttctaaggttcccgaaggtactgtctttgatacatacgtccatgccc 6398
Query: 166 caccggggaaaaccatatgtgtgccggtgcgtgtggaaccaaaagtgtattttgccactg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6397 caccggggaaaaccatatgtgtgccggtgcgtgtggaaccaaaagtgtattttgccactg 6338
Query: 226 aaagaactttactttcatggatatctatcggacttgttttgggcggtgtgtccacaagtt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6337 aaagaactttactttcatggatatctatcggacttgttttgggcggtgtgtccacaagtt 6278
Query: 286 tcttaacttatggtacgccaaccacaatggtcgcctctactggtttcttcttgactgcac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6277 tcttaacttatggtacgccaaccacaatggtcgcctctactggtttcttcttgactgcac 6218
Query: 346 tcttcaccatctggtttagtacctacacgtactgtaaacgtgttgtcaatatcagaatga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217 tcttcaccatctggtttagtacctacacgtactgtaaacgtgttgtcaatatcagaatga 6158
Query: 406 agcgctccatcgattacgaggataagtacggtcctcgtatgatctgtgcattcttgatgg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6157 agcgctccatcgattacgaggataagtacggtcctcgtatgatctgtgcattcttgatgg 6098
Query: 466 cctccatcttgtttaccttcttctgcaatcttgtatgaataacgtgcgcatctgacacca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6097 cctccatcttgtttaccttcttctgcaatcttgtatgaataacgtgcgcatctgacacca 6038
Query: 526 tatagactcatttagtatttttccataactgttaattagtaccctaaaatttgactttaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6037 tatagactcatttagtatttttccataactgttaattagtaccctaaaatttgactttaa 5978
Query: 586 tcattttaatataaaggagcagntagacatttcactcttcagtgaaacgttttgcatgac 645
|||||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||
Sbjct: 5977 tcattttaatataaaggagcagtaagacaattcactcttcagtg-aacggtttgcatgac 5919
Query: 646 tgccagaccttaaattacactttgcaccataatattgccatcttttccctncacttcttt 705
||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 5918 tgccagaccttaaataacactttgcaccataatattgccatctttcccctccacttcttt 5859
Query: 706 atttc-tcaatcttctaagtgtcaaagaattcgtagtgtttacattttcaactgtgagtt 764
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5858 atttcttcaatcttctaagtgtcaaagaattcgtagtgtttacattttcaactgtgag-t 5800
Query: 765 ttttgtcatatcaacaatgacc-aaattcaaac-aacaaatgggtcagctgggacctgca 822
||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 5799 ttttgtcatatcaacaaagaccaaaattcaaacaaacaaatggtcaagctgggacctgca 5740
Query: 823 tgg-ttatcgattaaggc 839
||| ||||||||||||||
Sbjct: 5739 tggattatcgattaaggc 5722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6071
Number of Sequences: 1807
Number of extensions: 6071
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)