BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH05FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1477 0.0
>3x_Contig1345
Length = 7291
Score = 1477 bits (745), Expect = 0.0
Identities = 797/805 (99%), Gaps = 7/805 (0%)
Strand = Plus / Plus
Query: 86 ccagcttattgggaacaaagatatgatcaagatatggctgcattgaatgtgcttcctcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ccagcttattgggaacaaagatatgatcaagatatggctgcattgaatgtgcttcctcca 957
Query: 146 actgttaccactagagtttctgaatacgtcccggagattgtccaatttgtcgagactatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 actgttaccactagagtttctgaatacgtcccggagattgtccaatttgtcgagactatt 1017
Query: 206 attagtaatggttatgcttatgctacttccgacggttcagtttactttgatactgcaaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 attagtaatggttatgcttatgctacttccgacggttcagtttactttgatactgcaaaa 1077
Query: 266 ttcgattcaagtgaggggcatgagtatgcgaaatgtcagccttggaataagggtcaactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 ttcgattcaagtgaggggcatgagtatgcgaaatgtcagccttggaataagggtcaactt 1137
Query: 326 gacttgattcaagacggtgaaggttcattatctgatttttctgccaaaaatggtaaaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 gacttgattcaagacggtgaaggttcattatctgatttttctgccaaaaatggtaaaaga 1197
Query: 386 tctgccaatgatttcgctctttggaaagcatctaaaccaggagaaccagaatggccttct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 tctgccaatgatttcgctctttggaaagcatctaaaccaggagaaccagaatggccttct 1257
Query: 446 ccttggggtaaaggaagacccggctggcacatcgaatgttctgttatggccagtgatata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 ccttggggtaaaggaagacccggctggcacatcgaatgttctgttatggccagtgatata 1317
Query: 506 catggttctgtaatagatatccacacaggcggtattgatctagctttccctcatcacgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 catggttctgtaatagatatccacacaggcggtattgatctagctttccctcatcacgat 1377
Query: 566 aatgaattggcacaatccgaagcctgctatgataaccatcagtggattaattacttcctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 aatgaattggcacaatccgaagcctgctatgataaccatcagtggattaattacttcctt 1437
Query: 626 catacaggtcatttacatattgaagggcaaaaaatgtcaaaatcattgaagaattttatt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 catacaggtcatttacatattgaagggcaaaaaatgtcaaaatcattgaagaattttatt 1497
Query: 686 accattgaagaagctctatacaaatacagcgctcgtcagttaagacttgcatttgcttct 745
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1498 accattgaagaagctctaaacaaatacagcgctcgtcagttaagacttgcatttgcttct 1557
Query: 746 gtgcaatggaacaatcaattagatttcaagggattcgttattaaacgaagtgaaaatctc 805
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 1558 gtgcaatggaacaatcaattagatttcaa-ggattcgttattaaacgaagtg-aaatctc 1615
Query: 806 -tgaatcttcatttactaattttcttcaaaaatataaggggctttggaataatgactaca 864
|||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1616 ttgaatcttcatttactaa-tttcttcaaaaatataa-gggcttt-gaataatgactaca 1672
Query: 865 agcattccttgggttttaggaaaga 889
||||||||||||| |||||||||||
Sbjct: 1673 agcattccttggg-tttaggaaaga 1696
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6175
Number of Sequences: 1807
Number of extensions: 6175
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)