BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH05RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1740 1499 0.0
>3x_Contig1740
Length = 21823
Score = 1499 bits (756), Expect = 0.0
Identities = 817/833 (98%), Gaps = 4/833 (0%)
Strand = Plus / Minus
Query: 48 cttccactgtacaaagacatttgttaagatcaaaccgttctctgtgtacaagcgagcaca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21015 cttccactgtacaaagacatttgttaagatcaaaccgttctctgtgtacaagcgagcaca 20956
Query: 108 gtatgatcttttgttgtatgttcaaaggagcgatccgtgtctttgttgtggcagaattca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20955 gtatgatcttttgttgtatgttcaaaggagcgatccgtgtctttgttgtggcagaattca 20896
Query: 168 tatattttgaaacagcttttgctacatgcgtgatggttactttacggcctcgagttttat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20895 tatattttgaaacagcttttgctacatgcgtgatggttactttacggcctcgagttttat 20836
Query: 228 ctgagttacccttcaaagattccaattctaataattgaacgctgctacggagtagatcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20835 ctgagttacccttcaaagattccaattctaataattgaacgctgctacggagtagatcaa 20776
Query: 288 ataatcttcttagatctccggttgatccagaacatttggtcgttgcaaatttgatagcca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20775 ataatcttcttagatctccggttgatccagaacatttggtcgttgcaaatttgatagcca 20716
Query: 348 tgggttgaaatatttcaaaacaagctggaaatatggaaagtttgcttctcacaatttcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20715 tgggttgaaatatttcaaaacaagctggaaatatggaaagtttgcttctcacaatttcaa 20656
Query: 408 acatttgttcagagttatatggatggaaatggataactttaggaagcaattctttctgta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20655 acatttgttcagagttatatggatggaaatggataactttaggaagcaattctttctgta 20596
Query: 468 aattaagtctgtttagaacacgatcttttaaatcaatgctatttgctattccgatgattg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20595 aattaagtctgtttagaacacgatcttttaaatcaatgctatttgctattccgatgattg 20536
Query: 528 tgacgttgataccgggctccttagccaataaaaacagatccagtataatttttgttgcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535 tgacgttgataccgggctccttagccaataaaaacagatccagtataatttttgttgcag 20476
Query: 588 atgatagcactgtggtttgcttgattaacttatccatttcgtccaggattaagataaaat 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20475 atgatagcactgtggtttgcttgattaacttatccatttcgtccaggataaagataaaat 20416
Query: 648 gagtatttggtttcgatctacaaaacgacttttaattcttcacactgtcgcaagctttat 707
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 20415 gagtatttggtttcgatctacaaaacgactttaaattcttcacactgtcgcaggctttat 20356
Query: 708 gatgtngntgcttatacttcccattgacgatttctaaaagtaatttctggaatatacatt 767
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20355 gatgttgttgcttatacttcccattgacgatttctaaaagtaatttctggaatatacatt 20296
Query: 768 tcggtttcgatagggcaatacagttgacccttggcttccgngatagactgggatattgtc 827
||||||||| |||||||||||||||| |||||||| ||| |||||||||| ||| ||||
Sbjct: 20295 ccggtttcgaaagggcaatacagttga-ccttggctaccgcgatagactggaata-tgtc 20238
Query: 828 tgactgggtttcaaaatagga-gtattcaacagttcttgggtcatgttttgtg 879
|||||| ||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 20237 tgactgtgtttcaaaataagatgtattcaacagttc-tgggtcatgttttgtg 20186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6811
Number of Sequences: 1807
Number of extensions: 6811
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)