BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH06FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig627 1368 0.0
>3x_Contig627
Length = 1782
Score = 1368 bits (690), Expect = 0.0
Identities = 844/884 (95%), Gaps = 10/884 (1%)
Strand = Plus / Minus
Query: 86 cttcggattgcatggaatgtaatattttgaagattaatactgccacattactgacctcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 cttcggattgcatggaatgtaatattttgaagattaatactgccacattactgacctcat 1672
Query: 146 gtgacaaggtaagcaagatattacaatgatctaatgcagcgtcgacatcggaactaaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 gtgacaaggtaagcaagatattacaatgatctaatgcagcgtcgacatcggaactaaaga 1612
Query: 206 aagaagcaagaccatttacaacgtggttagaaataatagctgccttcgtaatatccgtag 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 aagaagcaagaccaattacaacgtggttagaaataatagctgccttcgtaatatccgtag 1552
Query: 266 cagtaacgtcatattctatgatacccaaggcgaacgttgcagcttgaatggcattttcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 cagtaacgtcatattctatgatacccaaggcgaacgttgcagcttgaatggcattttcat 1492
Query: 326 aatctgcgtatcctaaatagagcctggctaattgtgtcttaagcaaagcaaagttgagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 aatctgcgtatcctaaatagagcctggctaattgtgtcttaagcaaagcaaagttgagta 1432
Query: 386 gttcactctcgtcctgggtcttttcaaatctctcttcaactaaagtggagagatgttgcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 gttcactctcgtcctgggtcttttcaaatctctcttcaactaaagtggagagatgttgcg 1372
Query: 446 ctaatgaagttgcggttgtgaaatcatgaagtctttccaatgctaaaatcgaaagctgag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 ctaatgaagttgcggttgtgaaatcatgaagtctttccaatgctaaaatcgaaagctgag 1312
Query: 506 tagcaaagacatcattctgagatttcttcaggtattggcttatcccaaataccaccgacg 565
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1311 tagcaaagacatcattctgagatttcttcaggtattggcttagcccaaataccaccgacg 1252
Query: 566 aaagctcttgctgagcaataatatctctctcattatctccattgcctatgcttctaccta 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 aaagctcttgctgtgcaataatatctctctcattatctccattgcctatgcttctaccta 1192
Query: 626 aaacattcttggcatataatagttgggcaaccttcgatttactattggcaagtatgtaag 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1191 aaacattcttggcatataatagttgggcaaccttcgatttactattggcaagtatgtagg 1132
Query: 686 cgtgggcatacatttctgcactgtctgtagccaggccttncttttcatatatcaaagcca 745
|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1131 cgtgggcaaacattcttgcactgtctgtagccaggccttccttttcatatatcaaagcca 1072
Query: 746 accctagccatgattgagaattctcangagcgatgnncttgggctttcatgaagatatcg 805
||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||||
Sbjct: 1071 accctagccatgattgagaatcctcaggagcgatgct-ttgggctttcatgagaatatcg 1013
Query: 806 cagggctagatcagtgtcgttattggcttaaagctaacaatggccatatcattacagcct 865
| |||||||||||||||||||||| ||||| ||||||| ||||||||| || ||| ||
Sbjct: 1012 c-gggctagatcagtgtcgttatt-gcttagagctaac-atggccata-caataccagct 957
Query: 866 ttctgttttctcttggaattnancggcattgcttttaattaaaaatgttggggaaacccg 925
| ||| |||||| ||||||| | || |||||||||| || |||||| |||||||| |
Sbjct: 956 tcctg-tttctc-tggaatttagcgcaattgcttttatgaaacaatgtt-gggaaacctg 900
Query: 926 gtagcttgaccttcattgttggcgatacctaaacctatccatga 969
||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct: 899 gtagc-tgacattcattgtt-gcgatacctaaacctatccatga 858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5659
Number of Sequences: 1807
Number of extensions: 5659
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)