BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH06RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1130 755 0.0
>3x_Contig1130
Length = 4826
Score = 755 bits (381), Expect = 0.0
Identities = 497/530 (93%), Gaps = 5/530 (0%)
Strand = Plus / Minus
Query: 423 tattattatgatattacattgttgagtaatctatacacaacgcttttacatatacaaatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4819 tattattatgatattacattgttgagtaatctatacacaacgcttttacatatacaaatg 4760
Query: 483 tacatattcttttcggcacgcatcgatgcagtacgcacggcttgcacataaccgatttaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4759 tacatattcttttcggcacgcatcgatgcagtacgcacggcttgcacataaccgatttaa 4700
Query: 543 gtcaactttctcgtcacttgtacgagacacatgacgaaagataatatattgggggacgga 602
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4699 gtcaactttctcgtcacttgtacgagacacatgacgaaagaaaatatattgggggacgga 4640
Query: 603 agataccggctgctggcctttttcttgatgcagcgttaccactttagtgactttagtc-t 661
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 4639 agataccggctgctggcctttttcttgatgcagcgttaccactttagtgac-ttagtctt 4581
Query: 662 gtcagattggtgnatctcatttaatgtgttggccatcaccancatatcaacatggaaaat 721
||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 4580 gtcagattgttgtatctcatttaatgtgttgtccatcaccacaatatcaacatggaaaat 4521
Query: 722 ttccgacgacataccgtcatggacttgccctgtccattctctggatgtgataatatttct 781
| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4520 tccgaacgacaaaccgtcatggacttgccctgtccattctctggatgtgatattatttct 4461
Query: 782 cgtggatgacgcat-accctggagaggtggttacattaggatgtncacttttgatcgcaa 840
|||||||||||||| ||| || ||||||||| |||||||||||| ||| |||||||||||
Sbjct: 4460 cgtggatgacgcataaccttgaagaggtggtaacattaggatgtccac-tttgatcgcaa 4402
Query: 841 atgaattttcacgttctgggattgctcctgttacacttattttggtccgacatatttgtg 900
||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 4401 atggaatttcacgttctgggattgctcctgtcacac-tattttggtccgacatatttgta 4343
Query: 901 agaagtcttttcaaattagttttcaaagattggaacttggatggcttgcc 950
|| |||| |||| |||||||||||||| || | ||||||||||||||
Sbjct: 4342 ggagttcttctcaatttagttttcaaagagtgaacattggatggcttgcc 4293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)