BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH07FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1427 0.0
3x_Contig38 991 0.0
>3x_Contig1517
Length = 8289
Score = 1427 bits (720), Expect = 0.0
Identities = 784/803 (97%), Gaps = 2/803 (0%)
Strand = Plus / Minus
Query: 86 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5056 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 4997
Query: 146 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4996 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 4937
Query: 206 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4936 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 4877
Query: 266 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4876 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 4817
Query: 326 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4816 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 4757
Query: 386 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4756 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 4697
Query: 446 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4696 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 4637
Query: 506 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 4577
Query: 566 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatctggcac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatctggcac 4517
Query: 626 cgaatctcatgcatagaaatgatgagtttgatcacaatgcggacatggacattgacatgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 cgaatctcatgcatagaaatgatgagtttgatcacaatgcggacatggacattgacatgg 4457
Query: 686 atctcgatacagatccgtacgcggatgcagacatggacatagagctggatgaatagtcct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 atctcgatacagatccgtacgcggatgcagacatggacatagagctggatgaatagtcct 4397
Query: 746 tagacatggtggtgaagtattattatcattttgatag-agttttaacacccatagagaga 804
|||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct: 4396 tagacatgtttgtgaagtattattatcattttgatagaagtattaacacctatagagaga 4337
Query: 805 gtttgttaaacactggtttttaacttgttggactgnaataatgttgaagaatataagaat 864
|| ||| || |||| ||||| |||||||| |||| | |||||| |||||||||||| |
Sbjct: 4336 gtatgtaaacaactgattttt-acttgttgaactgaattaatgtgaaagaatataagagt 4278
Query: 865 ggtaaggtcaaaattatgttgaa 887
| ||| |||||||||||||||||
Sbjct: 4277 gttaatgtcaaaattatgttgaa 4255
>3x_Contig38
Length = 925
Score = 991 bits (500), Expect = 0.0
Identities = 525/535 (98%), Gaps = 10/535 (1%)
Strand = Plus / Minus
Query: 86 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ccagaaagttctcggttggccataagataaattaggacaaacgaaacaacacctacaaaa 470
Query: 146 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtagcagcgaacagatcatctgcttagaatagttcactgcgaatgagcaaggtattagct 410
Query: 206 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacccgataggaatcg 265
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 409 atacaatgtcatcaggcttcaagatgaagaggtcaaggagtcctgacc----------cg 360
Query: 266 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ataactataagaaacaacggctaatatatgatttcgaaaacctatcgttggctcctaggg 300
Query: 326 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaccgatgggataaagaaacataaaattgattcagggttgaactcattcaaagcagttg 240
Query: 386 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taaataaaaggatgtgggatgtagttgaacgcgaattgagtggttcaaacaaaaatgata 180
Query: 446 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agatatatgaaagaatattcgatcatgtacgacagtttaactcgcaggtaataaaatggt 120
Query: 506 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atgactggcgatctgtggtagcaagcttgtgggtaaaatggtaccaacagcatagtccaa 60
Query: 566 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatct 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aattagatgaagtagatatgaatgttgagactgcagcagattccagagttgatct 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6309
Number of Sequences: 1807
Number of extensions: 6309
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)