BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH07RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1404 0.0
>3x_Contig1553
Length = 8593
Score = 1404 bits (708), Expect = 0.0
Identities = 828/859 (96%), Gaps = 7/859 (0%)
Strand = Plus / Minus
Query: 43 gcttcttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 gcttcttattgggaaatccttactgtcccattttggacatttcctatgacattctaaaat 5397
Query: 103 agggtatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 agggtatcggttctaataaaaaaattagtaatctcagtatacctatattaaaagaccgca 5337
Query: 163 caatcaataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 caatcaataccacaaaggacaatcgatacactccataaagacaaccaaaggaaaccaaaa 5277
Query: 223 aaaatgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcaggg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 aaaatgtcaccgaatctatttggaatcttcagagattatccgacaccaccagaatcaggg 5217
Query: 283 ttctggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 ttctggggtactcctacttctactatagattggtgtgaggagaattatgtgatatcgccc 5157
Query: 343 tatatagcggaatggtcaaacacactcactaatagtggatttattttactagcattatac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 tatatagcggaatggtcaaacacactcactaatagtggatttattttactagcattatac 5097
Query: 403 ctgttgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 ctgttgtattcttcatggaaaaataaactagagacccggtttaagttggtttgtgctggt 5037
Query: 463 tttggattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5036 tttggattggtcgggatcggatcctggttattccatatgactttgcaatacaagtaccag 4977
Query: 523 ttattagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4976 ttattagatgagttacctatggtttatgctacttgcattcctgcatggagcatattctgc 4917
Query: 583 gaggagattgatgtagctacgtcgaagatcatgtctcccaccaggagaaaacaatggact 642
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 4916 gaggagattgatgtagctacgtcgaggatcaggtctcccaccaggagaaaacaatggact 4857
Query: 643 gtcggattaaccatctttatgggtgctaatttacttacggctatatacctcattttc-ag 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4856 gtcggattaaccatctttatgggtgctaatttacttacggctatatacctcattttcaag 4797
Query: 702 aattc-acgattcatcaggctggttacgctct-atcaacgctatcgntatttggttggcc 759
||| | ||||| |||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct: 4796 aatccaacgatccatcaggctggttacgctctaatcaacgctatcgttatttggtttgcc 4737
Query: 760 ttc-aactcaccacacagtttggtaacgaatcggttgcttaaacg-aacctacaaaa-gc 816
||| |||||||||||||||||| ||||| ||||||| |||||| ||||||||||| ||
Sbjct: 4736 ttcaaactcaccacacagtttgtaaacgatccggttgc-taaacgtaacctacaaaatgc 4678
Query: 817 tatggtacttggtattaccatatttcgggctggtatttttgctgggcacctggatgttca 876
|||| |||||||||| |||||||||| ||||||| ||| | |||| || ||||||||
Sbjct: 4677 tatgttacttggtatcaccatatttctggctggttatttcgtctggcaacttgatgttca 4618
Query: 877 tttttgccagtttgggatc 895
||| || |||||| |||||
Sbjct: 4617 tttctgtcagttttggatc 4599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5685
Number of Sequences: 1807
Number of extensions: 5685
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)