BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH09FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1187 0.0
>3x_Contig1166
Length = 5040
Score = 1187 bits (599), Expect = 0.0
Identities = 732/768 (95%), Gaps = 7/768 (0%)
Strand = Plus / Minus
Query: 94 aggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaagaaagttttac 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 aggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaagaaagttttac 1751
Query: 154 agttaagctctgattgcataaaaattgatgagaacattgatacctttgctgttgtaaaac 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 agttaagctctgattgcataaaaattgatgagaacattgatacctttgctgttgtaaaac 1691
Query: 214 ataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaacgattgaaac 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 ataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaacgattgaaac 1631
Query: 274 ttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagctttgaatctg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 ttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagctttgaatctg 1571
Query: 334 tttgtttatatatacataaagtgccattggtgaagatactctctttgttacacgctcttt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 tttgtttatatatacataaagtgccattggtgaagatactctctttgttacacgctcttt 1511
Query: 394 tcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatgctcatcgctt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 tcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatgctcatcgctt 1451
Query: 454 tcatttttttttgtttttctctcatatatcanatacagttgggcatacaaaaaaaattaa 513
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 1450 tcatttttttttgtttttctctcatatatcaaatacagttggcaatacaaaaaaaattaa 1391
Query: 514 cttaagacgacatccaaagaattaatgcactttccagttatgctttttgtattgcactga 573
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1390 cttaagacgacatccaaagaattaaggcactttccagttatgctttttgtattgcactga 1331
Query: 574 gccgctcttttntttcttttcactgncatcttcactaacattcgacttatttttttacac 633
||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 1330 gccgctc-tttgtttcttttcactgccatcttcactaacattcgactta-ttttttacac 1273
Query: 634 aattgt-agccctcagccagcaaaacattactgttta-caaatttgttgggggaaggttg 691
|||||| |||||||||||||||||||||||||||||| ||||||||||| | || | |||
Sbjct: 1272 aattgtaagccctcagccagcaaaacattactgtttaccaaatttgttgtgtgaggtttg 1213
Query: 692 tgcatttgcgtcatgaataaggtaaattccataaccggggcgatctctaaac-aaaagtt 750
|||||||||||||||||||||||||| || |||| | | ||||||||||||| |||||||
Sbjct: 1212 tgcatttgcgtcatgaataaggtaaaatcaataagcagtgcgatctctaaacaaaaagtt 1153
Query: 751 gctttttcttcatacaatcaatcatttttctctttggtaaaagaaa-cttggatgaaaaa 809
|||| |||||||||| ||||||||| | |||||||| ||| ||||| |||||||||| |
Sbjct: 1152 gcttcttcttcatacgatcaatcatatctctctttgttaagagaaaccttggatgaagag 1093
Query: 810 ttattggcagatccggggttcagtaagctactt-atgatttcacaaga 856
|||||| ||||| |||| ||||||||||||| |||||| |||||||
Sbjct: 1092 ttattgcgagatcgtgggtccagtaagctacttaatgattccacaaga 1045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9363
Number of Sequences: 1807
Number of extensions: 9363
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)