BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH09RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 969 0.0
>3x_Contig1769
Length = 25795
Score = 969 bits (489), Expect = 0.0
Identities = 558/574 (97%), Gaps = 6/574 (1%)
Strand = Plus / Plus
Query: 37 caaaccttgagttctacactaccaaccactcctcaggatgtcagtgctttgttaccgtta 96
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18776 caaagcttgagttctacactaccaaccactcctcaggatgtcagtgctttgttaccgtta 18835
Query: 97 caaggtcatgattcgttgttaatggaattttccccagaggaacctggcaacatcgcatct 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18836 caaggtcatgattcgttgttaatggaattttccccagaggaacctggcaacatcgcatct 18895
Query: 157 agtgtggatccattattcccattgtatccctcgtccatgttaaccgctatgcccagcgac 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18896 agtgtggatccattattcccattgtatccctcgtccatgttaaccgctatgcccagcgac 18955
Query: 217 gcttttgcaacttatgaggatttcatcgcgaactaattcggaaacgcgcgttgtaatata 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18956 gcttttgcaacttatgaggatttcatcgcgaactaattcggaaacgcgcgttgtaatata 19015
Query: 277 gctcattcttattttttcactacccttctcttacttcacttaagaactttctattccaat 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19016 gctcattcttattttttcactacccttctcttacttcacttaagaactttctattccaat 19075
Query: 337 agtatattattactttcaattcttttattttttcccgttctttccatttgtatttttgtc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19076 agtatattattactttcaattcttttattttttcccgttctttccatttgtatttttgtc 19135
Query: 397 taattgattaagtattgattaatagaaagaatgaacttttttatttgactttacttctat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19136 taattgattaagtattgattaatagaaagaatgaacttttttatttgactttacttctat 19195
Query: 457 cttcaggccagctgatccattctcttnccctatgataga-gatacctacttttttccatg 515
|||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct: 19196 cttcaggccagctgatccattctcttccctaatgatagaggatacctactttttcccatg 19255
Query: 516 atgccgatgc-atacctccaggcaaag-atg-aaaatca-cacacattgaaaanntagac 571
|||||||||| | |||||||||||||| ||| ||||||| ||||||||||||| ||||
Sbjct: 19256 atgccgatgcaaaacctccaggcaaagaatgaaaaatcaccacacattgaaaaataagac 19315
Query: 572 at-cagttacccgtattttgatgtacccctggca 604
|| |||||||||||||||||||||| ||||||||
Sbjct: 19316 atacagttacccgtattttgatgtaaccctggca 19349
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,046
Number of Sequences: 1807
Number of extensions: 21046
Number of successful extensions: 348
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)