BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZH10RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1587                                                        1360   0.0  

>3x_Contig1587 
          Length = 10277

 Score = 1360 bits (686), Expect = 0.0
 Identities = 774/793 (97%), Gaps = 8/793 (1%)
 Strand = Plus / Minus

                                                                        
Query: 46   tcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagcaatc 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 tcttgaattgaaatcgcatatgtttggaaacactacagcaagcatttcaagacagcaatc 3094

                                                                        
Query: 106  tttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactactaatac 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 tttctgtgggaaatcaggacagcctacattacaaaacaataactgtaatactactaatac 3034

                                                                        
Query: 166  acttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaactac 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 acttcttacagaacaaactttaacgaataacactaatgcaactagtgcagcaacaactac 2974

                                                                        
Query: 226  tctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaacttgtt 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 tctgacttctcctgttggtcagaatagtaatgcaagcatttcacgcttacacaacttgtt 2914

                                                                        
Query: 286  aagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcattttcctc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 aagtacggagaataaggacgtgaatagttcttctgaacaattggcacactcattttcctc 2854

                                                                        
Query: 346  gatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgcttttaa 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 gatggagattgtggacaacaaagtccctggcgatgaatccacgaaggaagctgcttttaa 2794

                                                                        
Query: 406  tacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttaggaaa 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 tacttcaattaacgagaatcggcctgatgtaatacaggtgaaaatagcagatttaggaaa 2734

                                                                        
Query: 466  tgcatgttggtacgacgaacattacaccaatgcaatccaaacaagagagtatcgttcacc 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 tgcatgttggtacgacgaacattacaccaatgcaatccaaacaagagagtatcgttcacc 2674

                                                                        
Query: 526  agaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcctgctt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 agaagtaattctagactgttcttggggtgccagtgcagatatatggtcttttgcctgctt 2614

                                                                        
Query: 586  aatatttgagcttctcacaggagatttcttgtttgaacncacatacggtcactcatatac 645
            ||||||||||||||||||||||||||||||||||||||    | ||||||||||||||||
Sbjct: 2613 aatatttgagcttctcacaggagatttcttgtttgaaccacaaaacggtcactcatatac 2554

                                                                        
Query: 646  aaaggacgatgaccatattgcgcatatcataggattactgggcaatatttcagagagtct 705
            |||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 2553 aaaggacgatgaccatattgcgcaaatcatagaattactgggcaatattccagagagtct 2494

                                                                        
Query: 706  aatgacgaccggcagacccgttagaaacttttttcacgtccaggggaggagttgagaaat 765
            |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 2493 aatgacgaccggcagagccgttag-aacttttttcacgtccagggga-gagttgagaaat 2436

                                                                        
Query: 766  attttcaagaattaaagtactggccatttgaagaagtggttttaattgaaaaagtacaac 825
            | ||||||| |||||||||||||||| |||||| ||| |||||||||| |||||||||||
Sbjct: 2435 a-tttcaag-attaaagtactggcca-ttgaag-agt-gttttaattg-aaaagtacaac 2382

                         
Query: 826  atggggcccaagg 838
            |||| ||| ||||
Sbjct: 2381 atggcgccaaagg 2369


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7052
Number of Sequences: 1807
Number of extensions: 7052
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)