BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH11FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 842 0.0
>3x_Contig1669
Length = 15503
Score = 842 bits (425), Expect = 0.0
Identities = 460/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Minus
Query: 86 acgtcaagaaggttatcggttctttcaaggactgggaattcttcactggtgaatccatgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 acgtcaagaaggttatcggttctttcaaggactgggaattcttcactggtgaatccatgg 2187
Query: 146 acccagatggaatgttggtcttgttgaactaccgtgaagatggtaccactccattcgtcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 acccagatggaatgttggtcttgttgaactaccgtgaagatggtaccactccattcgtcg 2127
Query: 206 ctatctggaatcacggtgtcaaggctgaaaagatctaaacagcttaaggagaattttatt 265
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 ctatctggaagcacggtgtcaaggctgaaaagatctaaacagcttaaggagaattttatt 2067
Query: 266 ccacttcctcgcaatgccatttatttctttattcatctaatatcgtatcatatatgtata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 ccacttcctcgcaatgccatttatttctttattcatctaatatcgtatcatatatgtata 2007
Query: 326 tacaaataataatacaatatccgaaacaccaagtttgatatccaaaatacgctttaaatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 tacaaataataatacaatatccgaaacaccaagtttgatatccaaaatacgctttaaatt 1947
Query: 386 gagttctgtcttgaaaggtactaacactagctttaaaattccggtttactcagttgcata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gagttctgtcttgaaaggtactaacactagctttaaaattccggtttactcagttgcata 1887
Query: 446 atgatttttctatctagtgatttattatggaaaaaaaaatagagaaatgaagacttgatg 505
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1886 atgatttttctatctagtgatttattatggaaaaaaaataagagaaatgaagacatgat- 1828
Query: 506 ggggtttatttactatttgggggggtttgtaaccatttaatagccagcc 554
| |||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 1827 gtggtttatttactattt-ggggggtttgtaacaatttaatagcaagcc 1780
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8759
Number of Sequences: 1807
Number of extensions: 8759
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)