BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZH11RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1519                                                         763   0.0  

>3x_Contig1519 
          Length = 9351

 Score =  763 bits (385), Expect = 0.0
 Identities = 408/413 (98%), Gaps = 2/413 (0%)
 Strand = Plus / Minus

                                                                        
Query: 60   atattgggcttttttacttgcgtcattttcagtcttcattagatttttcacttctctacg 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 atattgggcttttttacttgcgtcattttcagtcttcattagatttttcacttctctacg 2756

                                                                        
Query: 120  tctttggaccaggttggccaataatcttggcagtacacctcgtgatttttctcttgaagg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 tctttggaccaggttggccaataatcttggcagtacacctcgtgatttttctcttgaagg 2696

                                                                        
Query: 180  cacatctggaagttcttcattatcctgtggattcctgtcaacagtagtgaagcaaatatt 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 cacatctggaagttcttcattatcctgtggattcctgtcaacagtagtgaagcaaatatt 2636

                                                                        
Query: 240  aaactcttgaatgatagatgggtacaacgaattgaaatccatgaccaagatatagttttt 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2635 aaactcttgaatgatagatgggtacaacgaattgaaatccatgaccaagatatagttttt 2576

                                                                        
Query: 300  atgcaaacctttttctggttcaaagaccaacccaccctgatattttgattttttactgga 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2575 atgcaaacctttttctggttcaaagaccaacccaccctgatattttgattttttactgga 2516

                                                                        
Query: 360  cacttgtggctccataggatcttcattcttttgttgtctgtcttgcttcatttgccttgt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cacttgtggctccataggatcttcattcttttgttgtctgtcttgcttcatttgccttgt 2456

                                                                 
Query: 420  ttctttatcaagaacaaggtaatcattttcggttaaattcatggaagcaaaat 472
            |||||||||| |||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct: 2455 ttctttatcaggaacaatgtaatca-tttctgttaaattcat-gaagcaaaat 2405


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,407
Number of Sequences: 1807
Number of extensions: 16407
Number of successful extensions: 153
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)