BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC32ZH12FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1461 0.0
>3x_Contig1600
Length = 9359
Score = 1461 bits (737), Expect = 0.0
Identities = 811/830 (97%), Gaps = 5/830 (0%)
Strand = Plus / Plus
Query: 85 aacatgaaaaaagatgacgctcccaccaaacgcaaagaagaaccacctttaaaagataaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 aacatgaaaaaagatgacgctcccaccaaacgcaaagaagaaccacctttaaaagataaa 2467
Query: 145 gtcgaggcactattggctttactaagagagttaactgatccaacggatgagcattcaaga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 gtcgaggcactattggctttactaagagagttaactgatccaacggatgagcattcaaga 2527
Query: 205 actttcattttcgaaagattaccttcaaggaaggagtatccggactactacaaggttatt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 actttcattttcgaaagattaccttcaaggaaggagtatccggactactacaaggttatt 2587
Query: 265 gagaagccagtagcattagagacgataacaaagaagttgaacaagaaacaataccaatct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 gagaagccagtagcattagagacgataacaaagaagttgaacaagaaacaataccaatct 2647
Query: 325 atcaacgaagtaaagtcggacttggagaccatgttcaataacgctaagctttacaatgaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 atcaacgaagtaaagtcggacttggagaccatgttcaataacgctaagctttacaatgaa 2707
Query: 385 gagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgattgactggttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 gagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgattgactggttc 2767
Query: 445 tcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaattacgttaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 tcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaattacgttaa 2827
Query: 505 aaacgaacacataataggggaaagaaacagactgcttataaaatgtagtgaattccacgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 aaacgaacacataataggggaaagaaacagactgcttataaaatgtagtgaattccacgt 2887
Query: 565 attacctttaataaattcttttgaaaaacctgacgatatatacagagtacttaaagacga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 attacctttaataaattcttttgaaaaacctgacgatatatacagagtacttaaagacga 2947
Query: 625 tatgtatatagctcanagtatttgaatcaataactgacgacatgcaaatacataatatcg 684
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 tatgtatatagctcaaagtatttgaatcaataactgacgacatgcaaatacataatatcg 3007
Query: 685 ttatacaccaaatatatgcaccttcataacacccacacgtctcacacaacatattgnnga 744
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3008 taaaacaccaaatatatgcaccttcataacacccacacgtctcacacaacatattg-gga 3066
Query: 745 ctgttttctttacttctgttttgaattacgacgcanatt-aatttcccttttgaaaaaat 803
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 3067 ctgttttctttacttctgttttgaattacgacgcaaattaaatttcccttttgaaaaaat 3126
Query: 804 tttcaaatg-aaaaaagctgtccagactctggtgatatataatcagaattacgg-aagcc 861
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 3127 tttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaa-tacggaaagcc 3185
Query: 862 atattttttcactttacacttttacaacagtagtacgggactgttcaatt 911
|||||||| |||| ||||| ||| ||||||||||| |||||| ||||
Sbjct: 3186 atatttttcaacttacaactttcacagcagtagtacggtactgttaaatt 3235
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7686
Number of Sequences: 1807
Number of extensions: 7686
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)