BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC32ZH12RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1320                                                        1382   0.0  

>3x_Contig1320 
          Length = 7350

 Score = 1382 bits (697), Expect = 0.0
 Identities = 804/829 (96%), Gaps = 9/829 (1%)
 Strand = Plus / Minus

                                                                        
Query: 46   acattacctcatctctctattttttgagcccatgctttgggtacttgaccggtaaattcc 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 acattacctcatctctctattttttgagcccatgctttgggtacttgaccggtaaattcc 1570

                                                                        
Query: 106  ttacttttacaatacgaaaataattcataggtacgtaaatacaaatgtgaatcggttaat 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1569 ttacttttacaatacgaaaataattcataggtacgtaaatacaaatgtgaatcggttaat 1510

                                                                        
Query: 166  acaacaagatatattgtcgacattaggaaagtcacagaaaaatcttcaaggatagcgtac 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 acaacaagatatattgtcgacattaggaaagtcacagaaaaatcttcaaggatagcgtac 1450

                                                                        
Query: 226  actttcgaatacttacaatgcagaatgacaataaagaagaagtgccggctctggctgttt 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 actttcgaatacttacaatgcagaatgacaataaagaagaagtgccggctctggctgttt 1390

                                                                        
Query: 286  tactaggctcaaacgttaaaaattggccatattctgaggatacattggttcatgccctac 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 tactaggctcaaacgttaaaaattggccatattctgaggatacattggttcatgccctac 1330

                                                                        
Query: 346  aattaaagtctcaacaagaacaaacaaaaagacaatattataaactagagaatgtcaaca 405
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 aattaaggtctcaacaagaacaaacaaaaagacaatattataaactagagaatgtcaaca 1270

                                                                        
Query: 406  agactttagagatgttgaaaactgctgtgagtgctggcattccagtaaatctgatccctc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 agactttagagatgttgaaaactgctgtgagtgctggcattccagtaaatctgatccctc 1210

                                                                        
Query: 466  aattattcaatagtgaccattctggtatggaaaccgaccctgcagatttacgtcatatga 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 aattattcaatagtgaccattctggtatggaaaccgaccctgcagatttacgtcatatga 1150

                                                                        
Query: 526  atcattctaaggagcaatctcccttattagcggtccctgacaagcagatgaaatcgtata 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 atcattctaaggagcaatctcccttattagcggtccctgacaagcagatgaaatcgtata 1090

                                                                        
Query: 586  agttccctcctgaaaaccagtctttgatgccgnctacatcaggtgctgaattgaaaactc 645
            ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 1089 agttccctcctgaaaaccagtctttgaggccgcctacaacaggtgctgaattgaaaactc 1030

                                                                        
Query: 646  atcgaagaacacattctcccgctagaatatgtgctgaagctgtggcagctcttaacagta 705
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1029 atcgaagaacacattctcccgctagaataggtgctgaagctgtggcagctcttaacagta 970

                                                                        
Query: 706  gtatggctcttaaaagataagaattgcatggtaatgatgatgaaaagcnngaaacgattg 765
            ||||||||||||||  | ||||||||||||||||||||||||||| ||   |||||||| 
Sbjct: 969  gtatggctcttaaagaaaaagaattgcatggtaatgatgatgaaaggcggaaaacgatt- 911

                                                                        
Query: 766  ggttctg-aaggcatatac-taaga-aatgatgtcattg-ccatcttc-aaaatg-atca 819
            ||||||| ||||||||||| ||||| |||||||||| || |||||||| |||||| | ||
Sbjct: 910  ggttctgaaaggcatatacataagagaatgatgtcaatgcccatcttcaaaaatgaacca 851

                                                             
Query: 820  acgactgnagtgttaaacttttc-gcttggcaaa-atattacggtcaaa 866
            ||||||| ||||||||||||||| |||||||||| |||| |||||||||
Sbjct: 850  acgactggagtgttaaacttttcggcttggcaaacatataacggtcaaa 802


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6883
Number of Sequences: 1807
Number of extensions: 6883
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)