BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA01FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1471 0.0
>3x_Contig1315
Length = 8846
Score = 1471 bits (742), Expect = 0.0
Identities = 811/825 (98%), Gaps = 8/825 (0%)
Strand = Plus / Minus
Query: 86 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4940 tgatcatttggatttgacttatatacatctctactacgcgaaaggaattattaaaggtaa 4881
Query: 146 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4880 aatacacgcataaacaaaaacaatggcatctagtactgctgcagctggtatgacttcttc 4821
Query: 206 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4820 ttctgatgggttggctttggtaaatccatcttcttatgttgggtttgattcgattacttc 4761
Query: 266 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 acagattgaacatcgtttgttgaagagaggatttcaattcaacgttatggtcgttggaca 4701
Query: 326 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4700 ttctggtctgggtaagagtactttgatcaacactttgtttgcatctcacttggttgattc 4641
Query: 386 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4640 ttctactggtaaggacatcactcaggaaccaattagtaagaccaccgagatcaaggtttc 4581
Query: 446 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 aacacattctttattggaagaccgtgtacgtttgaacgtgaacgtgattgacactccagg 4521
Query: 506 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ttttggtgaccagataaataacgacaaagtttgggaacctattgtcaagtacatcaagga 4461
Query: 566 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4460 gcaacactctcaatatttacgtaaagagttgactgctcaacgtgaaagacacattgtaga 4401
Query: 626 cactcgagtacatgcagtgttatatttcatccaacctaacggtaagggtctaacagaact 685
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4400 cactcgagtacatgcagtgttatatttcatccaa-ctaacggtaagggtctaacagaact 4342
Query: 686 tgacgttgctgctttgaagagattgacagaaatcgctaatgttattcccggtgatcgcta 745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4341 tgacgttgctgctttgaagagattgacagaaatcgctaatgtta-tcccggtgatcgcta 4283
Query: 746 aagctgataccttgacgttgaaatgaaagagctaacttcagaaacatcttacaagaagaa 805
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 4282 aagctgatactttgacgttg-aatgagagagctaacttcagaaacatcttacaagaagaa 4224
Query: 806 tttaaaaagtacaatttcagaatctatccatatgatttaaacgaatctgaccgatgaaga 865
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 4223 tttaaaaagtacaatttcagaatctatccatatgatttagacg-atctgaccgatgaaga 4165
Query: 866 attggaacctggattaaaagtataagattctattaattccatttg 910
| |||||| || ||||||||||||| |||||| ||||||||||
Sbjct: 4164 agtggaac--tgaataaaagtataaga-tctatt-attccatttg 4124
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7614
Number of Sequences: 1807
Number of extensions: 7614
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)