BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA01RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1328 0.0
>3x_Contig1469
Length = 9240
Score = 1328 bits (670), Expect = 0.0
Identities = 705/715 (98%), Gaps = 2/715 (0%)
Strand = Plus / Minus
Query: 44 gctttctagtttggttaacatgttgagagaaaaagagctcttgcatgaacctggagaagc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5651 gctttctagtttggttaacatgttgagagaaaaagagctcttgcatgaacctggagaagc 5592
Query: 104 atctattactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgca 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5591 atctattactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgca 5532
Query: 164 actaccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacgccagac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5531 actaccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacgccagac 5472
Query: 224 gcaaaacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 gcaaaacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaa 5412
Query: 284 tgataaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 tgataaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataa 5352
Query: 344 atgtagtatatgtggtaagagatttggtaatactcttgaagaaaaggagttggaaataca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 atgtagtatatgtggtaagagatttggtaatactcttgaagaaaaggagttggaaataca 5292
Query: 404 acatcttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 acatcttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccac 5232
Query: 464 tacatctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcaga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 tacatctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcaga 5172
Query: 524 ctttaaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 ctttaaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacc 5112
Query: 584 tacatttgcgaac-acagggaagattctactgatgcaatctatactaaactcanngaata 642
||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5111 tacatttgcgaacaacagggaagattctactgatgcaatctatactaaactcaggaataa 5052
Query: 643 atatattgtagtacccnattatgccacagatatgaagttccagtgtccctatttgtaccg 702
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5051 atatattgtagtaccggattatgccacagatatgaagttccagtgt-cctatttgtaccg 4993
Query: 703 aatccacatatggtaaatatgatgaagatctgggagaatgaatttggagcaactg 757
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4992 aatccacatatggtaaatatgatgaagatctgggagaatggatttggagcaactg 4938
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8164
Number of Sequences: 1807
Number of extensions: 8164
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)