BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA02FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1400 0.0
>3x_Contig1506
Length = 7652
Score = 1400 bits (706), Expect = 0.0
Identities = 781/800 (97%), Gaps = 5/800 (0%)
Strand = Plus / Minus
Query: 104 aacctcatttactaagaattgccacatctaaggactaaatcttttttgttcaggttctac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 aacctcatttactaagaattgccacatctaaggactaaatcttttttgttcaggttctac 4659
Query: 164 acaacgaaaacaatgtctcaatacactgatatcgatcgtttagccgttagcacgatttgt 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4658 acaacgaaaacaatgtctcaatacactgatatcgatcgtttagccgttagcacgatcaga 4599
Query: 224 ttgttagcagtcgaccaagtctctgctgccaactctggtcatccaggtgccccattgggt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 ttgttagcagtcgaccaagtctctgctgccaactctggtcatccaggtgccccattgggt 4539
Query: 284 ttggctccagctgcccatgtgatctggaagcaaatgagattgaatcctaagaatccagaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4538 ttggctccagctgcccatgtgatctggaagcaaatgagattgaatcctaagaatccagaa 4479
Query: 344 tggatcaaccgtgacagatttgtcttgtccaacggtcatgcctgtgcattgttgtactct 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4478 tggatcaaccgtgacagatttgtcttgtccaacggtcatgcctgtgcattgttgtactct 4419
Query: 404 ttgttacacttgttcggttacgacatgtccatcgaagatttgaagcatttcagacatctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4418 ttgttacacttgttcggttacgacatgtccatcgaagatttgaagcatttcagacatctg 4359
Query: 464 ggttctaagacccctggtcacccagaatttgaattgccgggtgttgaagttactaccggt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4358 ggttctaagacccctggtcacccagaatttgaattgccgggtgttgaagttactaccggt 4299
Query: 524 ccattgggtcaaggtatctctaacgctgttggtatggctattgctcaagccaacttcgct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4298 ccattgggtcaaggtatctctaacgctgttggtatggctattgctcaagccaacttcgct 4239
Query: 584 gccacttacaacaagccagattacgaattgtctgattcttacacttacgttttcttgggt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4238 gccacttacaacaagccagattacgaattgtctgattcttacacttacgttttcttgggt 4179
Query: 644 gacggttgtttgcaagaaagtgtttcttctgaagcctcttctttggcaggtcattttgag 703
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 4178 gacggttgtttgcaagaaggtgtttcttctgaagcctcttctttggcaggtcatttgagg 4119
Query: 704 ttgaagaacttgattgccttctattgatgat-accaaattaccatcgatggtaacatcaa 762
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 4118 ttgaagaacttgattgccttcta-tgatgataaccaaattaccatcgatggtaacatcaa 4060
Query: 763 cgtttctttcgatgaagacg-tagcaagagatacgaaccctacgtttgggaagtcttgca 821
|||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct: 4059 cgtttctttcgatgaagacgttagcaagagatacgaagcctacggttgggaagtcttgca 4000
Query: 822 cgtcgaaaac-gttacgacgatttggatgctatcagtnaagctttggaacaagctaanct 880
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 3999 cgtcgaaaacggtaacgacgatttggatgctatcagtaaagctttggaacaagctaagc- 3941
Query: 881 tttcggatagaacaactttg 900
|||| |||||| ||||||||
Sbjct: 3940 tttctgatagaccaactttg 3921
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5543
Number of Sequences: 1807
Number of extensions: 5543
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)