BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1189 0.0
>3x_Contig1697
Length = 16220
Score = 1189 bits (600), Expect = 0.0
Identities = 664/679 (97%), Gaps = 5/679 (0%)
Strand = Plus / Minus
Query: 49 acaaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10466 acaaaactaaacgatattaacgataagcagatcactggacccagatactggtactctgca 10407
Query: 109 cagcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10406 cagcgcgagatatatctatatctatatatatatatatatatattcacacaagaatagaac 10347
Query: 169 aagataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagacaataa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10346 aagataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagacaataa 10287
Query: 229 cttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10286 cttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgcagagaa 10227
Query: 289 tgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10226 tgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccctgtac 10167
Query: 349 ttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10166 ttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcgggaat 10107
Query: 409 ttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10106 ttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaaccagtatt 10047
Query: 469 catgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10046 catgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgtttctccg 9987
Query: 529 acgtttgtcaggagacttgcattgacaaagtgttattcttgttttgtttggttgagggct 588
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9986 acgtttgtcaggagacttgcattgac-aagtgttattcttgttttgtttggttgagggct 9928
Query: 589 ttncctgtacactatgtcgatctgtttatccatgtttcaagttcccgccagttgtgtaag 648
|| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9927 ttcctgttacactatgtcgatctgtttatccatgtttcaagtt-ccgccagttgtgtaag 9869
Query: 649 tttccggtgcgc-aacatgatccgatgagcgaatggtaaacctaggtaaacttgcattga 707
||||||||||| |||||||| ||| ||||||||||||||| || |||||||||| |||
Sbjct: 9868 -ttccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgca-tga 9811
Query: 708 gagtttacgcagggatttt 726
|||||||||||| ||||||
Sbjct: 9810 gagtttacgcagtgatttt 9792
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,924
Number of Sequences: 1807
Number of extensions: 26924
Number of successful extensions: 5188
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)