BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA04FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1421 0.0
>3x_Contig1698
Length = 21001
Score = 1421 bits (717), Expect = 0.0
Identities = 808/833 (96%), Gaps = 5/833 (0%)
Strand = Plus / Minus
Query: 86 ttcttatacatcacaaaataccttgctgaaaaaccagtgttatctgagagctttgcaaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12241 ttcttatacatcacaaaataccttgctgaaaaaccagtgttatctgagagctttgcaaag 12182
Query: 146 attcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtggaaattagtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12181 attcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtggaaattagtg 12122
Query: 206 aagccatccattcttaatgcccagctagaggtagtttcttcaagcatctgggttaagaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12121 aagccatccattcttaatgcccagctagaggtagtttcttcaagcatctgggttaagaat 12062
Query: 266 gatgttttaatggagtactataatgtgctgttgctgaaagccgataaatcatctgtcaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12061 gatgttttaatggagtactataatgtgctgttgctgaaagccgataaatcatctgtcaac 12002
Query: 326 tcgaatcagatattacagctacttttaaacaacgattctcttgtttatttgaatgaaaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12001 tcgaatcagatattacagctacttttaaacaacgattctcttgtttatttgaatgaaaag 11942
Query: 386 ggctccaaatatagtaaacttttaactacttcagctctctatcaattattcttcatggac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11941 ggctccaaatatagtaaacttttaactacttcagctctctatcaattattcttcatggac 11882
Query: 446 gttaccgaaaattcaaacattgccctacaaaataaacttttagaattctacagcggatcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11881 gttaccgaaaattcaaacattgccctacaaaataaacttttagaattctacagcggatcg 11822
Query: 506 ataactacatcagacattcttttgctatccatgttggacaaaatggaatccattgtcgga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11821 ataactacatcagacattcttttgctatccatgttggacaaaatggaatccattgtcgga 11762
Query: 566 caatcatggactaacgagatagtgagttgggaatttgttgattctcttcgcgagattgaa 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11761 caatcatggactaacgagatagtgagttgggaatttgttgattctcttcgcgagattg-a 11703
Query: 626 aattgaattaattgggcctttaaagttgataacanaggagaaagaatggttggttgttac 685
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 11702 aattgaattaattgggcctttaaagttgataacaaaggagaaagaagggttggttgttac 11643
Query: 686 aattagtatgaatgatatatcnaacacttttgat-attttccttcgcatcgcccaaggcc 744
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 11642 aattagtatgaatgatatatcaaacactttgaataattttccttcgcatcgcccaaggcc 11583
Query: 745 cgattcgttccaaactgttacatcaggaagaaaatgggacaaactcc-aaacctgtacaa 803
||||||||||||||||| |||| ||| | ||||||| ||||||||| ||||||||||||
Sbjct: 11582 cgattcgttccaaactggtacaacagaagaaaaatggaacaaactccaaaacctgtacaa 11523
Query: 804 ggcggaagttgcttcttttggaggaaatcattctactatttacgaaccattgnttgntat 863
|||||||||||||||||| |||| ||||||||||||||| ||||| |||||| ||| |||
Sbjct: 11522 ggcggaagttgcttctttgggagaaaatcattctactatatacgatccattgtttgttat 11463
Query: 864 gctatgtttgggttaattgggacgagtttcgtcaaaaaattctcggaagaaga 916
||||||||| ||||||||| |||||| ||||||| ||||| ||||||||||||
Sbjct: 11462 gctatgttt-ggttaattgtgacgag-ttcgtcagaaaatcctcggaagaaga 11412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7184
Number of Sequences: 1807
Number of extensions: 7184
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)