BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1362 1243 0.0
>3x_Contig1362
Length = 8864
Score = 1243 bits (627), Expect = 0.0
Identities = 768/800 (96%), Gaps = 14/800 (1%)
Strand = Plus / Plus
Query: 53 cgcttctgatacaaacttggtaaagttttggaattggggttggtttggaaggatcgatta 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cgcttctgatacaaacttggtaaagttttggaattggggttggtttggaaggatcgatta 640
Query: 113 agttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaagt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agttatcagcacaagcatcattgtatttctcggcgaaccatttcaaagatgattttaagt 700
Query: 173 caactctgttactattcaatagagattggaaatattgcttttcgaaatctacagtattgc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 caactctgttactattcaatagagattggaaatattgcttttcgaaatctacagtattgc 760
Query: 233 tcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgctt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tcaaaagcgctggtcttaagattctaatttggtgatttgcaatgtctaacttcattgctt 820
Query: 293 ccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttcct 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ccagaatttgaaacaccaatctgagagcttccaccaaagtcgatattgagttattttcct 880
Query: 353 ctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgcaat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctgcttttttgaactttgaggacattttgtctacccatggatctctcattggtgcgcaat 940
Query: 413 ggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatcccttta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ggtgtttgaataattgtgataaccagtcactgaaatttgacattacaagtgatcccttta 1000
Query: 473 agagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttttt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agagctcttgaatcaacaattcagtatccaaaacgtttgccacagtagatacttcttttt 1060
Query: 533 gaggaactattgttacaagaacatctttc-aagtattgaatagaggtactagtctagatc 591
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1061 gaggaactattgttacaagaacatctttcaaagtattgaatagaggtactagtctagatc 1120
Query: 592 tgttttcgtcg-aaacatcaagccctttgggttgt-aacataaa-ttcattctcaacatc 648
||||||||||| |||||||| ||| || |||||| |||||||| |||||||||||||||
Sbjct: 1121 tgttttcgtcgaaaacatcaggcc--tttggttgtaaacataaatttcattctcaacatc 1178
Query: 649 actccagtacctatcgggcatttgnctcttcttgatccctctttcaccattccaattttg 708
|||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 1179 actccagtacttatcggcaatttgtctcttcttgatccctctttcacca-tccaaatttg 1237
Query: 709 gcctaaattgttacataggatcgaacactatgttcgtgttctgattggagggatccttta 768
||||||||||| |||||||||||||||||||| ||||| ||||| | || |||| ||| |
Sbjct: 1238 gcctaaattgtaacataggatcgaacactatg-tcgtg-tctgagttga-ggattcttca 1294
Query: 769 cattctcagacaaaatcgatccctttcaagccattgcaaattatttggggggttaaagaa 828
|| |||||||| ||||||||| |||||||| |||||||||||| ||||||| ||||| |
Sbjct: 1295 caatctcagac-aaatcgatctctttcaag-cattgcaaattaattggggg--taaagga 1350
Query: 829 tttggagtggggtatgtttt 848
||||||| |||||||||||
Sbjct: 1351 attggagttgggtatgtttt 1370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7506
Number of Sequences: 1807
Number of extensions: 7506
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)