BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZA05FM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig17                                                          1205   0.0  
3x_Contig1762                                                         107   4e-23
3x_Contig1623                                                         103   6e-22
3x_Contig1487                                                         100   1e-20

>3x_Contig17 
          Length = 819

 Score = 1205 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Plus

                                                                       
Query: 87  cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaatttatga 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaatttatga 268

                                                                       
Query: 147 aaactgaaaagcgtcatcttgttacattgaaaatgcagtaccataacttatgagtatgca 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaactgaaaagcgtcatcttgttacattgaaaatgcagtaccataacttatgagtatgca 328

                                                                       
Query: 207 ttacctgattttgccaaaagatgacgtttaaaaattaaggttggattcactgccaactgt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttacctgattttgccaaaagatgacgtttaaaaattaaggttggattcactgccaactgt 388

                                                                       
Query: 267 taagatcgatgttgaattatcatcaatggcaagcaaacaaagatattccaccaaataagg 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taagatcgatgttgaattatcatcaatggcaagcaaacaaagatattccaccaaataagg 448

                                                                       
Query: 327 cacttcaaaataacagttatgaaacgggtattttggttgttatgtccagttttattttta 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cacttcaaaataacagttatgaaacgggtattttggttgttatgtccagttttattttta 508

                                                                       
Query: 387 gctccctatgttttgccgatttcacttggaacagctgataaagatggaatactgaacgta 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gctccctatgttttgccgatttcacttggaacagctgataaagatggaatactgaacgta 568

                                                                       
Query: 447 tattttgttaagtttggttggttttggacatcggtaatatcatgcttatgtgtgataagg 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tattttgttaagtttggttggttttggacatcggtaatatcatgcttatgtgtgataagg 628

                                                                       
Query: 507 tactctaatatagtcaaccattggaaaaggtacctgctattaacgttatggtggatgata 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tactctaatatagtcaaccattggaaaaggtacctgctattaacgttatggtggatgata 688

                                                                       
Query: 567 tttacccaagaagtatttggattgacgccgctaatggatctagtgttccttaacagcgga 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttacccaagaagtatttggattgacgccgctaatggatctagtgttccttaacagcgga 748

                                                                       
Query: 627 ggaatttgttcatttgacatatttagtacagatggcaatgaacagacactgaatttgcaa 686
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaatttgttcatttgacatatttagtacagatggcaatgaacagacactgaatttgcaa 808

                   
Query: 687 ttccatga 694
           ||||||||
Sbjct: 809 ttccatga 816


>3x_Contig1762 
          Length = 22098

 Score =  107 bits (54), Expect = 4e-23
 Identities = 54/54 (100%)
 Strand = Plus / Minus

                                                                  
Query: 87   cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaat 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccctaat 6106


>3x_Contig1623 
          Length = 14379

 Score =  103 bits (52), Expect = 6e-22
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                                
Query: 87   cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccta 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7079 cgctaggctattaacccaaagcgagaatcataccactagaccacacgcccta 7130


>3x_Contig1487 
          Length = 9002

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 87   cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5403 cgctaggctattaacccaaagcgagaatcataccactagaccacacgccc 5452


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6071
Number of Sequences: 1807
Number of extensions: 6071
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 4
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)