BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA05RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1570 0.0
>3x_Contig1785
Length = 37935
Score = 1570 bits (792), Expect = 0.0
Identities = 848/861 (98%), Gaps = 5/861 (0%)
Strand = Plus / Plus
Query: 46 taacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatattgcatta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9502 taacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatattgcatta 9561
Query: 106 agaggccggaataaaaggtttagtacggagattaacatgtgcatagaggattttcgttct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9562 agaggccggaataaaaggtttagtacggagattaacatgtgcatagaggattttcgttct 9621
Query: 166 aacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataacttgaca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9622 aacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataacttgaca 9681
Query: 226 acagggataaactatattacttgatatcacttgtcgcacatggattcaacaatcggtctc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9682 acagggataaactatattacttgatatcacttgtcgcacatggattcaacaatcggtctc 9741
Query: 286 tgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagttatagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9742 tgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagttatagg 9801
Query: 346 taaatagttagttatatctagagaaatactcgtacatccatagtcaggccatccaccaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9802 taaatagttagttatatctagagaaatactcgtacatccatagtcaggccatccaccaaa 9861
Query: 406 atagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattgaaccat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9862 atagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattgaaccat 9921
Query: 466 tgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttgaatgaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9922 tgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttgaatgaag 9981
Query: 526 aattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaaatataa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9982 aattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaaatataa 10041
Query: 586 tagcagttaattgattgactattttaacttgaaaggaagctatatatatttttaatggcc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 10042 tagcagttaattgattgactattttaacttgaaaggaagctatatatatttttaagggcc 10101
Query: 646 ttgcaagcggttttttagactaagaataagaaatagat-agccaagatgggttccggtac 704
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 10102 ttgcaagcggttttttagactaagaataagaaa-agataagccaagatgggttccggtac 10160
Query: 705 tgctagaagacctagcttgagcacttncacatccaatgacatgatggntgacgagcctca 764
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 10161 tgctagaagacctagcttgagcacttccacatccaatgacatgatggttgacgagcctca 10220
Query: 765 tggtgtgcctcgtctttcccgtcgtttgactgggtttttgcctca-gaaattnagagtat 823
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 10221 tggtgtgcctcgtctttcccgtcgtttgactgggtttttgcctcaggaaattaagagtat 10280
Query: 824 t-atactatgattcccttgcagagtagaagaatttggaaaaaacatgggtttaagaagtt 882
| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 10281 taatactatgattcctttgcagagtagagaaatttggaaaaaacatggggttaagaagtt 10340
Query: 883 tgaaa-cccagacgaatttca 902
||||| |||||||||||||||
Sbjct: 10341 tgaaaccccagacgaatttca 10361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7292
Number of Sequences: 1807
Number of extensions: 7292
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)