BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA07FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1125 1013 0.0
>3x_Contig1125
Length = 5749
Score = 1013 bits (511), Expect = 0.0
Identities = 664/703 (94%), Gaps = 9/703 (1%)
Strand = Plus / Minus
Query: 86 ccttagttgccgaagtctatgt-cttttaatgtttaatgttttaatttcaatataagatt 144
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 3606 ccttagttgccgaagtctatgtacttttaatgtttaatgttttaagttcaatataagatt 3547
Query: 145 tatttagtt-ctttcaaagaaaaaacaaagtcttaaaaaccgtttgataaaaggaaaaca 203
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3546 tatttagtttctttcaaagaaaaaacaaagtcttaaaaaccgtttgataaaaggaaaaca 3487
Query: 204 agaaaaaacactcagtagaacctgtgcagaagtggaaacaaagagaggtaacaatattag 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3486 agaaaaaacactcagtagaacctgtgcagaagtggaaacaaagagaggtaacaatattag 3427
Query: 264 tgagtggtaaataaagaaccggggcacaggtagatgcacaattggtgtagctctgatctt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3426 tgagtggtaaataaagaaccggggcacaggtagatgcacaattggtgtagctctgatctt 3367
Query: 324 taaatgccaatgttcttttctatgttgttgagaatattccagtttctgtaactatcgggg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 taaatgccaatgttcttttctatgttgttgagaatattccagtttctgtaactatcgggg 3307
Query: 384 gttagagcttgcttgttactgaagaagtgacagctgttgccactctggtctcgatacgct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306 gttagagcttgcttgttactgaagaagtgacagctgttgccactctggtctcgatacgct 3247
Query: 444 ctactctgagctttcgtcattttgatcgttttattatattacccggaccacatatctgat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3246 ctactctgagctttcgtcattttgatcgttttattatattacccggaccacatatctgat 3187
Query: 504 tatggcgaggattatcaacagttgtactattaccccggactt-atttattcgtgtaacga 562
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 3186 tatggcgaggattatcaacagttgtactatta-cccggacttaatttattcgtgtaacga 3128
Query: 563 tacgcgggttactattgttcaccgatattgcaagatagcttaacatttaaacagttcaag 622
|||||||||||||||||||||| ||||| |||||||||| ||||| | ||||||| ||||
Sbjct: 3127 tacgcgggttactattgttcacggatatagcaagatagcataacaataaaacagtacaag 3068
Query: 623 agattcctgatttgcgatagttattattagtgctctaattttccagccattccccattta 682
|||||||||||||||||||||||| || |||||||||| || | || | |||| |||
Sbjct: 3067 agattcctgatttgcgatagttataataggtgctctaatattacgagcaatacccagtta 3008
Query: 683 ttggcagtaaattaacccttttacagttacttaagcccctattttctgggaagggactta 742
| |||||||| ||| || ||||||||||| |||| |||||||| || ||| |||||||
Sbjct: 3007 attgcagtaaa-taaaccatttacagttac-taaggccctatttcttgtgaa-ggactta 2951
Query: 743 ttgtttaaaaggaaaatttggaccgttttaaaataaaaaaaac 785
||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 2950 -tgtataaaaagaaaaatt-gaacgttttaaaataaaaaaaac 2910
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9987
Number of Sequences: 1807
Number of extensions: 9987
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)