BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1098 0.0
>3x_Contig1709
Length = 16948
Score = 1098 bits (554), Expect = 0.0
Identities = 609/622 (97%), Gaps = 4/622 (0%)
Strand = Plus / Plus
Query: 48 tgtacaactgcttcaattgctcctctaatatatccattttttcagcagcatctacaaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16325 tgtacaactgcttcaattgctcctctaatatatccattttttcagcagcatctacaaaga 16384
Query: 108 attggtcaggctccttatattttggagcagttgcaaaggatagtcccataaaacttcctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16385 attggtcaggctccttatattttggagcagttgcaaaggatagtcccataaaacttcctc 16444
Query: 168 cagtctctgtatctaatccaccattcttcaagactctttctgcatcctcagaaccaagga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16445 cagtctctgtatctaatccaccattcttcaagactctttctgcatcctcagaaccaagga 16504
Query: 228 gtttcaattcagagatatgaatatcagaaatatcattactatcatgagaggcctttgaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16505 gtttcaattcagagatatgaatatcagaaatatcattactatcatgagaggcctttgaac 16564
Query: 288 ctgaaatctgctctcttactttggactcttggctccatttctctgaagtcaagaatagta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16565 ctgaaatctgctctcttactttggactcttggctccatttctctgaagtcaagaatagta 16624
Query: 348 taaagtcttcatccttctgaagcacatgattactagcgatatgttggagcattcgttcca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16625 taaagtcttcatccttctgaagcacatgattactagcgatatgttggagcattcgttcca 16684
Query: 408 tctgagcccttctattttcaataaaatcttgtttaaatctaccaaccgcttgtttttcat 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16685 tctgagcccttctattttcaataaaatcttgtttaaatctaccaaccgcttgtttttcag 16744
Query: 468 gatgtgggggtattattttacccccatggttgtngttgtagttgcctgtaaagccatcta 527
|| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 16745 gaggtgggggtattattttaccccaatggttgt-gttgtagttgcctgtaaagccatcta 16803
Query: 528 aagtctctataacgtctttttaactctagttggtttgccctctagtaaattagactttgc 587
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16804 aagtctctataacgtc-ttttaactctagttggtttgccctctagtaaattagacttgct 16862
Query: 588 tatgacggtatacttcacgtagacagacgtaatgtctccaattttcattggatcaacgac 647
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16863 tatgacggtatactccacgtagacagacgtaatgtctccaattttca-tggatcaacgac 16921
Query: 648 ccgaatctggaatttctcaatg 669
| ||||| |||||||||||||
Sbjct: 16922 cgaaatct-gaatttctcaatg 16942
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7576
Number of Sequences: 1807
Number of extensions: 7576
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)