BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZA08RM1.SCF screened BAC_end (899 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1408 1340 0.0 >3x_Contig1408 Length = 6607 Score = 1340 bits (676), Expect = 0.0 Identities = 722/736 (98%), Gaps = 2/736 (0%) Strand = Plus / Minus Query: 49 aattcacctagtgtagtgcagcaaagtccat-agggctaaccagtgatgcgcatcgtgga 107 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1382 aattcacctagtgtagtgcagcaaagtccatcagggctaaccagtgatgcgcatcgtgga 1323 Query: 108 aatgatgctgatgtaatgcattttgaggatccgttaattggccatgatggagaaagcaca 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 aatgatgctgatgtaatgcattttgaggatccgttaattggccatgatggagaaagcaca 1263 Query: 168 gtaaattcggatcttgaagaacaatctctcgagtacaatgaagcacctaccgatttttct 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 gtaaattcggatcttgaagaacaatctctcgagtacaatgaagcacctaccgatttttct 1203 Query: 228 gtactagacgacaatgaaacaagatctttagatgtaaggacctacacactaaacaaagaa 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gtactagacgacaatgaaacaagatctttagatgtaaggacctacacactaaacaaagaa 1143 Query: 288 aatgctaaccaacgtcttattttcagacatccaacgagacagacattccgatcttttacg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 aatgctaaccaacgtcttattttcagacatccaacgagacagacattccgatcttttacg 1083 Query: 348 tcgagaagaagttcactcaacagtaaagatccacttaaaatactaaagccgattcctcaa 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1082 tcgagaagaagttcactcaacagtaaagatccacttaaaatactaaagccgattcctcaa 1023 Query: 408 ccgattactcgagaggagcagacaagaatcaataattcgcatgcacattatacccctttc 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 ccgattactcgagaggagcagacaagaatcaataattcgcatgcacattatacccctttc 963 Query: 468 aaagctattggcaaaaagattagtgccgtggtaccagacgctcatttcgggagtttttgg 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 962 aaagctattggcaaaaagattagtgccgtggtaccagacgctcatttcgggagtttttgg 903 Query: 528 gaaaaaccctccccagaacataatagaatcactttagatagtactaaaattgggaaaatc 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 gaaaaaccctccccagaacataatagaatcactttagatagtactaaaattgggaaaatc 843 Query: 588 atcaagatggaaaagatgattgttatggttaagcaagcttttactgccagagtaattccc 647 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 842 atcaagatggaaaagatgattgttatggttaagcaagctttaactgccagagtaattccc 783 Query: 648 cctcatttctnncgagatgaaccagtagatactaggatttatgaacgatggnaagagtat 707 |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 782 cctcatttctccgaagatgaaccagtagatactagaatttatgaacgatggaaagagtat 723 Query: 708 ttcgttgtagctagagggacgggaaacccggatgctncagttaagctaccactttacact 767 |||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||| Sbjct: 722 ttcgttgtagctagagggacgggaaacccggatgctccagtaaggctacaactttacact 663 Query: 768 tc-agaaaatttaaac 782 || |||||| |||||| Sbjct: 662 tcaagaaaaattaaac 647 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5657 Number of Sequences: 1807 Number of extensions: 5657 Number of successful extensions: 33 Number of sequences better than 1.0e-20: 1 length of query: 899 length of database: 10,358,551 effective HSP length: 16 effective length of query: 883 effective length of database: 10,329,639 effective search space: 9121071237 effective search space used: 9121071237 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)