BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA09FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig851 1160 0.0
>3x_Contig851
Length = 3821
Score = 1160 bits (585), Expect = 0.0
Identities = 640/654 (97%), Gaps = 4/654 (0%)
Strand = Plus / Minus
Query: 93 tggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaacgta 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2564 tggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaacgta 2505
Query: 153 atgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcatctat 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2504 atgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcatctat 2445
Query: 213 agtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggcctagaag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2444 agtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggcctagaag 2385
Query: 273 gggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagtattca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2384 gggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagtattca 2325
Query: 333 ttggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggtagtg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2324 ttggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggtagtg 2265
Query: 393 gtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaactgtt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2264 gtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaactgtt 2205
Query: 453 gctggtactggaatattccttgctgctgggcaagtggttgattaggataacttggatatt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2204 gctggtactggaatattccttgctgctgggcaagtggttgattaggataacttggatatt 2145
Query: 513 gaggttgataaaagcctccattgttgtaatgaaggttgttgattaccatacgccattggt 572
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 2144 gaggttgataaaagcctccattgttgt-atggaggttgttgattaccatacgccattggt 2086
Query: 573 tgagaaaattgtgggttgtacatatgtgggaatccatgcggaaactgcattggattagtt 632
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2085 tgagaaaattgtgggttgtacatatgtgggaatccaggcggaaactgcattggattagtt 2026
Query: 633 ggaactattgattttgaatgcngtctttcattttttcgtctcttacaa-aaaattgtncc 691
||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| ||
Sbjct: 2025 ggaactattgattttgaatgcggtctttcatttttcggtctcttacaagaaatttgtccc 1966
Query: 692 tca-aactgccatctttcgtatctctgtattgactnctattttc-ctgatattt 743
||| |||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 1965 tcagaactgccatcttcggtatctctgtattgacttctattttctctgatattt 1912
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7069
Number of Sequences: 1807
Number of extensions: 7069
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)