BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA10FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1063 0.0
>3x_Contig1589
Length = 10239
Score = 1063 bits (536), Expect = 0.0
Identities = 695/739 (94%), Gaps = 10/739 (1%)
Strand = Plus / Plus
Query: 87 ataaggatgctggaattatcactcacatcggtgccgctttctccagagatcaacctgaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 ataaggatgctggaattatcactcacatcggtgccgctttctccagagatcaacctgaaa 6655
Query: 147 agatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatgattg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656 agatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatgattg 6715
Query: 207 acaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatatcactcaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6716 acaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatatcactcaag 6775
Query: 267 ctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttggatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6776 ctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttggatg 6835
Query: 327 ctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgattttttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6836 ctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgattttttt 6895
Query: 387 atgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgagaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6896 atgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgagaat 6955
Query: 447 cattacataacactaactactgatgtaccatcttgggaacctagttctaaacanccggtt 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 6956 cattacataacactaactactgatgtaccatctt-ggaacctagttctaaacacccggtt 7014
Query: 507 agcgttagtgaacataccttcttttcacgatacaacgattaattgggagcctttaaacct 566
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 7015 agcgttagtgaacataccttctttcaacgatacaacgataaattgggagcctttaaacct 7074
Query: 567 ggttttattttgatgaccaatgttctgagtatgactt-aatcttatgcggnatccacttc 625
||||||| | |||||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 7075 ggttttaataagatgaccaatgttctgagtatgacttaaatctaatgcggcatccacttc 7134
Query: 626 atnccatatatacatgggtgcaggtttgaactgcaacattgc-atgatcaatgataacgc 684
|| | |||||||||| |||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 7135 atccaatatatacattggtgcaggtttgaactgcaacaatgcaaggatcaatgataacgc 7194
Query: 685 atttagggaagcctgtcacccaaaaattttta-caaactttttttccaaattttacccaa 743
| |||||||| ||||| ||| | | || || || ||| | ||||||||||||||| ||
Sbjct: 7195 aattagggaacgctgtccaccagagagttctaccagactctctttccaaattttacctaa 7254
Query: 744 tttaaacttttaccttcaattccctcggttacattttttacctttctgaagggtccaatt 803
||||| |||| |||| | ||||||||||||| | |||||| ||||||||| |||||||
Sbjct: 7255 tttaa--ctttaacttctaatccctcggttaca-tctttacc-ttctgaaggttccaatt 7310
Query: 804 tggggcaaatgaattcggg 822
| ||| ||||||||||||
Sbjct: 7311 t--ggcgaatgaattcggg 7327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6798
Number of Sequences: 1807
Number of extensions: 6798
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)