BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA10RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1170 0.0
>3x_Contig1528
Length = 10737
Score = 1170 bits (590), Expect = 0.0
Identities = 696/725 (96%), Gaps = 5/725 (0%)
Strand = Plus / Minus
Query: 39 aggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgtt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 aggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgtt 2057
Query: 99 tctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgagaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 tctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgagaa 1997
Query: 159 tgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatct 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 tgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatct 1937
Query: 219 ggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcacc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 ggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcacc 1877
Query: 279 acagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcaggt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 acagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcaggt 1817
Query: 339 gtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgtaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 gtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgtaa 1757
Query: 399 cctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgtt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 cctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgtt 1697
Query: 459 gatgccagtgaaacattatcattatcagaaccaagg-aatcattggcattcgtataatga 517
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1696 gatgccagtgaaacattatcattatcagaaccaaggaaatcattggcatcggtataatga 1637
Query: 518 gtggaagatgtatgcatgcttgacttcgaagggctgnttcttgagttgaaggagctgcta 577
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1636 gtggaagatgtatgcatgcttgacttcgaagggctgtttctgaggttgaaggagctgcta 1577
Query: 578 ctttgtagcgcatcataataatcagtgtcacctgtgcttacagatttg-aact-acagtg 635
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 1576 ctttgtagcgcatcataataatcagtgtcacctgtgcttacagaattgaaactaacagtg 1517
Query: 636 gaatgggtcacagagggatggagattttatgccagcctatag-cattattgccgacacgt 694
|||||| |||||||||||||||||||| |||| ||||| || ||| || ||||||||||
Sbjct: 1516 gaatggttcacagagggatggagatttaatgcaggcctagagccataatcgccgacacgt 1457
Query: 695 ggattattatggttcttcgagttcttattttgggaaatttaccggggccaactttaaagc 754
|||||||||| ||| |||||||||| | || |||||| || ||| ||||||| |||||
Sbjct: 1456 tgattattatgtttc-tcgagttcttcatctgtgaaattaacagggaccaacttcaaagc 1398
Query: 755 aaaac 759
|||||
Sbjct: 1397 aaaac 1393
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6838
Number of Sequences: 1807
Number of extensions: 6838
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)