BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA11FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig478 983 0.0
>3x_Contig478
Length = 3300
Score = 983 bits (496), Expect = 0.0
Identities = 608/640 (95%), Gaps = 4/640 (0%)
Strand = Plus / Plus
Query: 110 tcaatgaatacttctcagttttctgtatcaaaacaaccccaacaccagagtggtagcaac 169
||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaatgaatacatatcagttatatgtatcaaaacaaccccaacaccagagtggtagcaac 374
Query: 170 tctggtttgcattctctattgacccatgattctagaaattgacttttatggcagttgtct 229
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 375 tctggtttgcattctctattgacccatgattctagaaattgaatatcatggcagttgtct 434
Query: 230 tcaaagctacctaactctgaagtgtgtggttattcaaaaatataagactataaacatatt 289
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaaagctacataactctgaagtgtgtggttattcaaaaatataagactataaacagtgg 494
Query: 290 attatcttcatatataatgcacttctaaattttaatgatcgaaatactcgaaaatacatt 349
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtatcatcttttataatgcacttctaaattttaatgatcgaaatactcgaaaatacatt 554
Query: 350 tgtactgaagaattctattacctaacatgttccagtcctgctttgtaatattgagttctt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtactgaagaattctattacctaacatgttccagtcctgctttgtaatattgagttctt 614
Query: 410 caagtaattttatcttgctgaaaactgaacctcccttccaggtcaacattgagggatcca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caagtaattttatcttgctgaaaactgaacctcccttccaggtcaacattgagggatcca 674
Query: 470 tatcatgtggaggaggtaagatattaattggtaaaagatcatcatcactatgaagagttt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatcatgtggaggaggtaagatattaattggtaaaagatcatcatcactatgaagagttt 734
Query: 530 gtaaagaatcccagtatgcttctatttctgcctttatcaattttgataactttttcttat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtaaagaatcccagtatgcttctatttctgcctttatcaattttgataactttttcttat 794
Query: 590 atgcaatcgccgcttgaaggatcagta-gttctagatctaatttgttatcggtttcatta 648
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 795 atgcaatcgccgcttg-aggatcagtaggttctagatctaatttgttatcggtttcataa 853
Query: 649 gacttgattacttcaccgatcttttccatttaagtggcttaatggcggatttactcaaag 708
|||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||
Sbjct: 854 gacttgattacttcaccgatcttttcca-ttaaggtgcttaat-gcggatatactcaaaa 911
Query: 709 ccttgggcctccaaattttgattcttttcggtagaatgaa 748
||| ||||||||||| |||||||| | || |||||||||
Sbjct: 912 gctttggcctccaaatattgattctatccgttagaatgaa 951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7429
Number of Sequences: 1807
Number of extensions: 7429
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)