BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1241 0.0
>3x_Contig1716
Length = 19108
Score = 1241 bits (626), Expect = 0.0
Identities = 653/661 (98%), Gaps = 2/661 (0%)
Strand = Plus / Minus
Query: 47 ttgataccattcatagccatcgaaccgtcaaccttcaccttttgcaattgaatcaacaac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12620 ttgataccattcatagccatcgaaccgtcaaccttcaccttttgcaattgaatcaacaac 12561
Query: 107 gaacgaaccatattgtcaaaaacaatgcttttcacagggttctcgatctgatgttcataa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12560 gaacgaaccatattgtcaaaaacaatgcttttcacagggttctcgatctgatgttcataa 12501
Query: 167 atcttcataaaatcttgtaagtcaccgtccataatctgtttcgttaatgaatcaacatct 226
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12500 atcttcataaaatcttgtaagtcaccgtccataatctgtttcgttaaggaatcaacatct 12441
Query: 227 acattagttcccggtggagaacgatctcggagaaattcgacaatcattcggattaatgag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12440 acattagttcccggtggagaacgatctcggagaaattcgacaatcattcggattaatgag 12381
Query: 287 ttcaattccgatgtcaagttgtcctttgttgtgacatataattctcctgaatcgaatcta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12380 ttcaattccgatgtcaagttgtcctttgttgtgacatataattctcctgaatcgaatcta 12321
Query: 347 acggtgtcccagatctgagtaatcggtgtccagatccaattttcccaaagacctgacaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12320 acggtgtcccagatctgagtaatcggtgtccagatccaattttcccaaagacctgacaca 12261
Query: 407 aactcatatgaaccttgagacacagttgtccatagagattgtccgttttgaacgagtttc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12260 aactcatatgaaccttgagacacagttgtccatagagattgtccgttttgaacgagtttc 12201
Query: 467 ttcaaaagcatatgtccgtaaatggacaacacagacaattgaaaccattgtctctgatac 526
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12200 ttcaaaagcataggtccgtaaatggacaacacagacaattgaaaccattgtctctgatac 12141
Query: 527 caatgggggatacggacgtcttctggtatggtgaattgtagatgggacacggcattcaaa 586
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12140 caaggggggatacggacgtcttctggtatggtgaattgtagatgggacacggcattcaaa 12081
Query: 587 cgagacatgattttatccaaagacacatctttcaaagtcgattctgtgtcagctttttta 646
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12080 cgagacatgattttatccaaggacacatctttcaaagtcgattctgtgtcagctttttta 12021
Query: 647 ccgccatcattctcatcatatgtccttggttttcaaaacgggacaattcttcaactgttg 706
|||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct: 12020 ccgccatcattctcatcatatgtc--ttgttttcaaaacgggacaattcttcacctgttg 11963
Query: 707 a 707
|
Sbjct: 11962 a 11962
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6781
Number of Sequences: 1807
Number of extensions: 6781
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)