BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA12FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1714 908 0.0
>3x_Contig1714
Length = 18873
Score = 908 bits (458), Expect = 0.0
Identities = 571/598 (95%), Gaps = 8/598 (1%)
Strand = Plus / Plus
Query: 89 ttcgttccataccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacga 148
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5391 ttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaactttacga 5450
Query: 149 attgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5451 attgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgtggt 5510
Query: 209 gttgaattgtcg-tcgttccatgggattacgacttcaccaccgaagaatatgacggtttg 267
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 gttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggtttg 5570
Query: 268 ttcatctctaatggtcctggtaatccagccattctgcatgaagtgtccgatagattgact 327
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5571 ttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattgact 5630
Query: 328 aaagttttacatgcgaagaataccccagtcttcggtatctgtttgggtcatcaattacta 387
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 aaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaattacta 5690
Query: 388 tctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaatatt 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 gctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaatatt 5750
Query: 448 ccatgtacttagactgtctctggtagatgttatatcacttctc-aaaccatggtttcgct 506
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5751 ccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggtttcgct 5810
Query: 507 gtagatgaaactagtttgaccaatggctggaaaacaattgttcaccaacgcttacgatgg 566
||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 5811 gtagatgaaactagtttgaccaatggctggaaatc-attgttcaccaacgctaacgatgg 5869
Query: 567 ttccaatgaaaggtatttatcacttcaagttggctttacttctccgtttaatttccatcc 626
|||||||| |||| |||||||||| |||| || ||||||||||||| || ||||||||
Sbjct: 5870 ttccaatg-aagggatttatcactcagagtt-gccttacttctccgttcaa-ttccatcc 5926
Query: 627 tggatttacttcaggtccaagagacactggaattcttggttcgatgtcttcattcaat 684
|| || |||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 5927 tgaatctactccaggtccaagagacact-gaattctt-gttcgatgtcttcattcaat 5982
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,969
Number of Sequences: 1807
Number of extensions: 13969
Number of successful extensions: 185
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)