BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZA12RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig411 1316 0.0
>3x_Contig411
Length = 1533
Score = 1316 bits (664), Expect = 0.0
Identities = 762/788 (96%), Gaps = 6/788 (0%)
Strand = Plus / Minus
Query: 43 gcttctcaaga-ggtcgatttctacgaatggaaacaggaccagaaccacagagatacgca 101
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 gcttctcaagaaggtcgatttctacgaatggaaacaggaccagaaccacagagatacgca 1381
Query: 102 ggtgatgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 ggtgatgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatg 1321
Query: 162 tggtgatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 tggtgatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccg 1261
Query: 222 tatcaagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 tatcaagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaa 1201
Query: 282 atccaagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 atccaagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagatt 1141
Query: 342 gcctgtaataatgcatagattaaagatggcacagacactcaaggatgccgttcaattcat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 gcctgtaataatgcatagattaaagatggcacagacactcaaggatgccgttcaattcat 1081
Query: 402 tgaacaaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tgaacaaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaac 1021
Query: 462 aaggaatttggaggattacgttacatggacagattcatccaagatcaagaagactgtact 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 aaggaatttggaggattacgttacatggacagattcatccaagatcaagaagactgtact 961
Query: 522 acgttatagatacgcggtcgatgattttgacgatgcctagattgatcctgctatacttgc 581
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 acgttatagaaacgcggtcgatgattttgacgatgcctagattgatcctgctatacttgc 901
Query: 582 cttcngaagtangataaatggcataaactattattttaccaatttgaaaagaaagtaagt 641
|||| |||||| || ||| |||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 900 cttcggaagtaggaaaaagggcaaaaactattattttacaaatttgaaaggaaagtaagt 841
Query: 642 agtagtggtatatatgtattcat-agaaaaagtattctaattacaatcttntgcttcnag 700
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||
Sbjct: 840 agtagtggtatatatgta-tcataagaaaaagtattctaattacaatcttttgcttcgag 782
Query: 701 ctcggttccaatgtatatggatatgccggat-atgcatattaacacgttaaggattgtat 759
||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct: 781 ctcggttccaatgtatatggatatgccggataatgcatataaacacg-taaggattgtat 723
Query: 760 tcaacaagacttcaaaagaagtcctaaaaaaccgtaatggtaaatccaagggaataaatg 819
||||||||||| ||||||| || |||||||| | ||||||||| | ||||||| ||||
Sbjct: 722 tcaacaagactccaaaagaggt-ctaaaaaaacagaatggtaaaacaaagggaaataatg 664
Query: 820 ctcccttt 827
||||||||
Sbjct: 663 ctcccttt 656
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6385
Number of Sequences: 1807
Number of extensions: 6385
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)