BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB01FM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 888 0.0
>3x_Contig1542
Length = 13810
Score = 888 bits (448), Expect = 0.0
Identities = 487/496 (98%), Gaps = 3/496 (0%)
Strand = Plus / Minus
Query: 88 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12845 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 12786
Query: 148 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12785 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 12726
Query: 208 ccaaaacaacatattctaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 267
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12725 ccaaaacaacagatccaaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 12666
Query: 268 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12665 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 12606
Query: 328 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12605 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 12546
Query: 388 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12545 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 12486
Query: 448 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgctac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12485 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgcaac 12426
Query: 508 atcatatttattttggtcactgtttatatgtcgtactctatatttataattcgatactgt 567
|||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct: 12425 atcagatttattttggtcactgtatatat-tcgtactctatatttataatt-gatactg- 12369
Query: 568 aggaaaacgttgagtt 583
||||||||||||||||
Sbjct: 12368 aggaaaacgttgagtt 12353
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7480
Number of Sequences: 1807
Number of extensions: 7480
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)