BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZB01FM1.SCF screened BAC_end (1040 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1542 888 0.0 >3x_Contig1542 Length = 13810 Score = 888 bits (448), Expect = 0.0 Identities = 487/496 (98%), Gaps = 3/496 (0%) Strand = Plus / Minus Query: 88 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12845 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 12786 Query: 148 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12785 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 12726 Query: 208 ccaaaacaacatattctaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 267 ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12725 ccaaaacaacagatccaaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 12666 Query: 268 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12665 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 12606 Query: 328 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12605 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 12546 Query: 388 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12545 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 12486 Query: 448 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgctac 507 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 12485 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgcaac 12426 Query: 508 atcatatttattttggtcactgtttatatgtcgtactctatatttataattcgatactgt 567 |||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| Sbjct: 12425 atcagatttattttggtcactgtatatat-tcgtactctatatttataatt-gatactg- 12369 Query: 568 aggaaaacgttgagtt 583 |||||||||||||||| Sbjct: 12368 aggaaaacgttgagtt 12353 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7480 Number of Sequences: 1807 Number of extensions: 7480 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 1040 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1024 effective length of database: 10,329,639 effective search space: 10577550336 effective search space used: 10577550336 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)