BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB02FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1192 1548 0.0
>3x_Contig1192
Length = 5015
Score = 1548 bits (781), Expect = 0.0
Identities = 826/833 (99%), Gaps = 6/833 (0%)
Strand = Plus / Minus
Query: 86 aatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatctcaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3304 aatgactgtaccgaatttcaaccgacattgagggtaggcaatgtggaacttaatctcaaa 3245
Query: 146 gacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatttcac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3244 gacggggggtctggctctattgaagttgataaaccaaagagttcataccatccatttcac 3185
Query: 206 agctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgactttgat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3184 agctatattcaaaatgtgatggagaatgtacaaaattatgactcggatgatgactttgat 3125
Query: 266 gagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttgaatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3124 gagaatggaaatgacgttgaacagagttttagtataagttcagattatgaatttgaatcc 3065
Query: 326 tcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaagtcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3064 tcggaggaactaataacaacaggtggtacgatcgaacagtttgatagttcaatgaagtcg 3005
Query: 386 ttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaagatata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3004 ttaacaattgaagaaattcccgggaaaacaatcactgcatcacttacaacaaaagatata 2945
Query: 446 tcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgaggatgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2944 tcacaaggaaattctgataatagctctggcgatgaatcatttggattctgtgaggatgat 2885
Query: 506 tttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggactcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2884 tttgaaggttcgataggaaaagtgtttgtttccaatattcgaatcggagctgggactcat 2825
Query: 566 tcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtagatgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2824 tcttatcatgtctcatgtcatgaaatatacggagatagtgagcctagatgggtagatgat 2765
Query: 626 gaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagcttat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2764 gaaatgatgaatgaaataattgccgaaatgggcttacctgaacaccgatttagagcttat 2705
Query: 686 tacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatatgctgat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2704 tacaaacatctacacaagtcattcattgaagaagaggaagagccagaggaatatgctgat 2645
Query: 746 atcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacctttcgcc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 atcccctttgatgatgatgacagtgatgattctactgcggatcaatgcgaacctttcgcc 2585
Query: 806 gaagatgaatctc-gtgaagatcttgatgatctcgtgtcttacgctct-aaatac-atta 862
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 2584 gaagatg-atctcggtgaagatcttgatgatctcgtgtcttacgctctaaaatacaataa 2526
Query: 863 gcagcgaaaaa-tgaat-ccatactacttcattggatattagggggaaaggaa 913
||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2525 gcagcgaaaaattgaataccatactacttcattggatattagggggaaaggaa 2473
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7834
Number of Sequences: 1807
Number of extensions: 7834
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)