BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZB03FM1.SCF screened BAC_end (938 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1165 1314 0.0 >3x_Contig1165 Length = 4837 Score = 1314 bits (663), Expect = 0.0 Identities = 790/823 (95%), Gaps = 7/823 (0%) Strand = Plus / Plus Query: 86 cttggacgtcgctcactttttcttgcacgccctgtgagttcacaatgaccaacgagtcat 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 914 cttggacgtcgctcactttttcttgcacgccctgtgagttcacaatgaccaacgagtcat 973 Query: 146 ccgttttcaatgttttgacatccaccatttgatcttctcgcaagaactcgttcaatacac 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 ccgttttcaatgttttgacatccaccatttgatcttctcgcaagaactcgttcaatacac 1033 Query: 206 tgggcggccttagattcaacattatcagatttttcaagaaatcatgtctaatatcaaaat 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 tgggcggccttagattcaacattatcagatttttcaagaaatcatgtctaatatcaaaat 1093 Query: 266 tgttcccggaataatcatcaaataagtcctcatttctctcaggggaatcatttttattcg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 tgttcccggaataatcatcaaataagtcctcatttctctcaggggaatcatttttattcg 1153 Query: 326 aataataagatttaatagcttttttaaccttttcatcgatgttttgtagtgagttgacaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 aataataagatttaatagcttttttaaccttttcatcgatgttttgtagtgagttgacaa 1213 Query: 386 ttaccgatggattttgtggtaagaagtctttgataatcaatggtaatctttttgtaatga 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 ttaccgatggattttgtggtaagaagtctttgataatcaatggtaatctttttgtaatga 1273 Query: 446 aatgaacgtattttctttcaagaaggttgaaatttgtgttggtttgatgatataatttat 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 aatgaacgtattttctttcaagaaggttgaaatttgtgttggtttgatgatataatttat 1333 Query: 506 tattaaccaactgagcgaatgacgtatatgtggtttcaattagatcagtgatttgctctt 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 tattaaccaactgagcgaatgacgtatatgtggtttcaattagatcagtgatttgctctt 1393 Query: 566 gaatcaagtgctcttccgctagggatgacgatcaccgagaatttattgagctgaatttct 625 ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 1394 gaatcaagtgctcttccgctagggaagacgacaaccgagaatttattgagctgaatttct 1453 Query: 626 cgagcaattgagaatctgaaagtg-tgaaatgatgaaatctattgttgagccattagttt 684 |||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| Sbjct: 1454 cgagcaattgagaatctg-aagtgttgaaatgatgaatcttattgttgagccataagttt 1512 Query: 685 tttgtaaatcgtatcagtttcaaatcttgtatcttattgggaggttgaagatgtaccaga 744 || ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 1513 ttgtaaaatcgtatcagtttcaaatcttgtatcttatt-ggaggttgaagatgtagcaga 1571 Query: 745 aagggcgagatccatcggcttggttagagccagaatttcctgcaaaggcggtagcaccac 804 ||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| Sbjct: 1572 aagggcgagatccatcggcttgg-tagagccaggagttcctgcaaagcgggtagcacca- 1629 Query: 805 cttgaaggaaagaatatttggaggggatatcaccataacgagctttgcactcagtgaaag 864 ||||||||| ||||||||| |||| || |||||||| |||||||||||||||||||||| Sbjct: 1630 cttgaaggagagaatattt-gaggtgaattcaccatagcgagctttgcactcagtgaaag 1688 Query: 865 gtttaaattggttttcaaattctcgggccatacgcttccctaa 907 |||||| || | | ||||||||||| | |||||||||||||| Sbjct: 1689 gtttaattttg-tctcaaattctcgtccaatacgcttccctaa 1730 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8030 Number of Sequences: 1807 Number of extensions: 8030 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 1 length of query: 938 length of database: 10,358,551 effective HSP length: 16 effective length of query: 922 effective length of database: 10,329,639 effective search space: 9523927158 effective search space used: 9523927158 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)