BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZB03FM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1165                                                        1314   0.0  

>3x_Contig1165 
          Length = 4837

 Score = 1314 bits (663), Expect = 0.0
 Identities = 790/823 (95%), Gaps = 7/823 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   cttggacgtcgctcactttttcttgcacgccctgtgagttcacaatgaccaacgagtcat 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  cttggacgtcgctcactttttcttgcacgccctgtgagttcacaatgaccaacgagtcat 973

                                                                        
Query: 146  ccgttttcaatgttttgacatccaccatttgatcttctcgcaagaactcgttcaatacac 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  ccgttttcaatgttttgacatccaccatttgatcttctcgcaagaactcgttcaatacac 1033

                                                                        
Query: 206  tgggcggccttagattcaacattatcagatttttcaagaaatcatgtctaatatcaaaat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tgggcggccttagattcaacattatcagatttttcaagaaatcatgtctaatatcaaaat 1093

                                                                        
Query: 266  tgttcccggaataatcatcaaataagtcctcatttctctcaggggaatcatttttattcg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tgttcccggaataatcatcaaataagtcctcatttctctcaggggaatcatttttattcg 1153

                                                                        
Query: 326  aataataagatttaatagcttttttaaccttttcatcgatgttttgtagtgagttgacaa 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 aataataagatttaatagcttttttaaccttttcatcgatgttttgtagtgagttgacaa 1213

                                                                        
Query: 386  ttaccgatggattttgtggtaagaagtctttgataatcaatggtaatctttttgtaatga 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 ttaccgatggattttgtggtaagaagtctttgataatcaatggtaatctttttgtaatga 1273

                                                                        
Query: 446  aatgaacgtattttctttcaagaaggttgaaatttgtgttggtttgatgatataatttat 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 aatgaacgtattttctttcaagaaggttgaaatttgtgttggtttgatgatataatttat 1333

                                                                        
Query: 506  tattaaccaactgagcgaatgacgtatatgtggtttcaattagatcagtgatttgctctt 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 tattaaccaactgagcgaatgacgtatatgtggtttcaattagatcagtgatttgctctt 1393

                                                                        
Query: 566  gaatcaagtgctcttccgctagggatgacgatcaccgagaatttattgagctgaatttct 625
            ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||
Sbjct: 1394 gaatcaagtgctcttccgctagggaagacgacaaccgagaatttattgagctgaatttct 1453

                                                                        
Query: 626  cgagcaattgagaatctgaaagtg-tgaaatgatgaaatctattgttgagccattagttt 684
            |||||||||||||||||| ||||| ||||||||||||   |||||||||||||| |||||
Sbjct: 1454 cgagcaattgagaatctg-aagtgttgaaatgatgaatcttattgttgagccataagttt 1512

                                                                        
Query: 685  tttgtaaatcgtatcagtttcaaatcttgtatcttattgggaggttgaagatgtaccaga 744
            ||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1513 ttgtaaaatcgtatcagtttcaaatcttgtatcttatt-ggaggttgaagatgtagcaga 1571

                                                                        
Query: 745  aagggcgagatccatcggcttggttagagccagaatttcctgcaaaggcggtagcaccac 804
            ||||||||||||||||||||||| ||||||||| | |||||||||||  |||||||||| 
Sbjct: 1572 aagggcgagatccatcggcttgg-tagagccaggagttcctgcaaagcgggtagcacca- 1629

                                                                        
Query: 805  cttgaaggaaagaatatttggaggggatatcaccataacgagctttgcactcagtgaaag 864
            ||||||||| ||||||||| |||| ||  |||||||| ||||||||||||||||||||||
Sbjct: 1630 cttgaaggagagaatattt-gaggtgaattcaccatagcgagctttgcactcagtgaaag 1688

                                                       
Query: 865  gtttaaattggttttcaaattctcgggccatacgcttccctaa 907
            |||||| || | | |||||||||||  | ||||||||||||||
Sbjct: 1689 gtttaattttg-tctcaaattctcgtccaatacgcttccctaa 1730


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8030
Number of Sequences: 1807
Number of extensions: 8030
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)