BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB04FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1191 0.0
>3x_Contig634
Length = 1748
Score = 1191 bits (601), Expect = 0.0
Identities = 666/687 (96%), Gaps = 1/687 (0%)
Strand = Plus / Minus
Query: 87 cctgacctctacgtgccttatctaccaagcaacttttcccgttacttcaaatgaaatcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cctgacctctacgtgccttatctaccaagcaacttttcccgttacttcaaatgaaatcat 663
Query: 147 caataattaagattagttaaaatgtaaacaaaggcatggggttacgaaacggaaaaacag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caataattaagattagttaaaatgtaaacaaaggcatggggttacgaaacggaaaaacag 603
Query: 207 taggcgatagagaagcagagatccattgtccacactaggtgtgcttcagcaagcttctat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 taggcgatagagaagcagagatccattgtccacactaggtgtgcttcagcaagcttctat 543
Query: 267 actatggcagaggagctgaaaggatttcctcatgagagactatctatctcattgaggagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 actatggcagaggagctgaaaggatttcctcatgagagactatctatctcattgaggagt 483
Query: 327 aattcacagcaatatcaagatattcttttgttttttgatgattatcagtttgatttggat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aattcacagcaatatcaagatattcttttgttttttgatgattatcagtttgatttggat 423
Query: 387 agcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatacactgttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agcaccaaccagcacttgtgtagtctggcagaattactgttaaagtctcatacactgttg 363
Query: 447 gcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttgattggatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcagagctgttttctgatgatgtgagcgtttctcaactcttaccgtattttgattggatt 303
Query: 507 caagatggaagatctgaattttatcagctcttcaacgggataaagaccatcgaaaaagtg 566
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 302 caagagggaagatctgaattttatcagctcttcaacgggataaagaccatcgaaaaggtg 243
Query: 567 ttgctgcatctgatggaaatcatccaagaggaatttgggtgttatgaagatgaactattn 626
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 242 ttgctgcatctgatggaaatcatcgaagaggaatttgggtgtaatgaagatgaactattc 183
Query: 627 cagaaagagttgactgcactttttgatttattagaggagatatcanatactttattgtcc 686
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct: 182 cagaaggagttgactgcactttttgatttattagaggagatatcagatacattagtgtcc 123
Query: 687 cttaaaacaatcatcttatcattaaaaaacctgttcgacaccgcctttaaagttcaacca 746
| ||| ||||||||| |||||||||||||||||||||||||||| || |||||||| |
Sbjct: 122 ataaaaccaatcatctcatcattaaaaaacctgttcgacaccgcc-atagagttcaacga 64
Query: 747 aatttttcaagatcatttgaacagtct 773
||| || |||||||| ||||||||||
Sbjct: 63 aatattcaaagatcatatgaacagtct 37
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8365
Number of Sequences: 1807
Number of extensions: 8365
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)