BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 908 0.0
3x_Contig1701 739 0.0
>3x_Contig1805
Length = 19369
Score = 908 bits (458), Expect = 0.0
Identities = 511/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Minus
Query: 49 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8027 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 7968
Query: 109 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7967 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 7908
Query: 169 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7907 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 7848
Query: 229 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 7788
Query: 289 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7787 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 7728
Query: 349 gtatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7727 gtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 7668
Query: 409 gtagtcaaggagatagttggctgtgttgattttacatcagatatggttgcatcagattca 468
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 gtagtcaaggagaaagttggctgtgttgattttacatcagatatggttgcatcagattca 7608
Query: 469 ctttcggggacagtggtttcgatggggcaagt-gtggtttaaatagtggtcatgccatt- 526
|| |||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 7607 ctctcggtgacagtggtatcgatagggcaagtagtggtataaatagtggtcatgccatta 7548
Query: 527 cttgttgtaatgacagtagtcattgaaaaaggtggctttgttgatg 572
||||||||| |||||||||||| ||| || | ||||| ||||||||
Sbjct: 7547 cttgttgtagtgacagtagtcaatgagaaggttggctctgttgatg 7502
>3x_Contig1701
Length = 10926
Score = 739 bits (373), Expect = 0.0
Identities = 394/401 (98%)
Strand = Plus / Minus
Query: 49 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 8117
Query: 109 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8116 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 8057
Query: 169 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 228
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 tcagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttact 7997
Query: 229 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 7937
Query: 289 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 gtttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 7877
Query: 349 gtatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 gtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 7817
Query: 409 gtagtcaaggagatagttggctgtgttgattttacatcaga 449
|||||||| |||| ||||||||||||||| ||||||||||
Sbjct: 7816 gtagtcaatgagaaggttggctgtgttgatgttacatcaga 7776
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5620
Number of Sequences: 1807
Number of extensions: 5620
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)